| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 195,506 – 195,616 |
| Length | 110 |
| Max. P | 0.630971 |
| Location | 195,506 – 195,616 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.48 |
| Mean single sequence MFE | -45.28 |
| Consensus MFE | -29.69 |
| Energy contribution | -28.87 |
| Covariance contribution | -0.83 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 195506 110 - 22407834 GCAUUUAAAUGCACGUUCUUGUGC------GGCGGAAGGCUCCCCAAGGGUGGCGAGCUGGCCACUUGCGAUUGGGUUGCCUGUUGAGGCUGUACGGUGACCACUUUACUUAUGAU ((((....))))..(((.((((((------(((...((((..((((((((((((......)))))))....)))))..))))......))))))))).)))............... ( -40.40) >DroVir_CAF1 11008 110 - 1 GCGUUUACAUGCAGAUUCUUGUGC------GGCGGCAGACUGCCCAUAGGCGGCGAGCUGGCCACCUGGGUUUGUAUCGCCUGCUGUGGCUGCACGGUAACCACCUUGCUAAUGAU .((((.....((((......((((------(((.((((...(((....)))(((((((..(((.....)))..)).)))))..)))).)))))))(((....))))))).)))).. ( -43.50) >DroPse_CAF1 12569 116 - 1 GCAUUCACGUGGAGGCUCUUGUGCCCAAGAGGCGGCAGGCUGCCUAAAGGCGGGGAGCUUGCCACCUGCGAUUGGGUGGCCUGCUGCGGCUGCACUGUCACCACCUUGCUGAUGAU (((.....((((.(((....((((...((..(((((((((..(((((..(((((..(....)..)))))..)))))..)))))))))..)))))).))).))))..)))....... ( -57.40) >DroSec_CAF1 11589 110 - 1 GCAUUGACAUGAACGUUCUUAUGC------GGCGGAAGGCUGCCCAAGGGAGGCGAGCUAGCCAUCUGCGAUUGGGUUGCCUGUUGUGGCUGUACGGUAACCACUUUACUUAUGAU .......(((((.(((.(....((------.((((.((((.((((((.((((((......))).)))....)))))).)))).)))).)).).)))((((.....))))))))).. ( -36.10) >DroMoj_CAF1 10898 110 - 1 GCAUUCACAUGCAAAUUCUUAUGC------GGCGGCAGGCUACCCAUGGGCGGCGAGCUGGCCACUUGUGUCUGUAUCGCCUGCUGUGGCUGCACGGUGACAACCUUGCUAAUGAU ((((....))))..........((------.((((((((((((.((..((.(((......))).))..))...)))..))))))))).)).(((.(((....))).)))....... ( -43.10) >DroAna_CAF1 10703 110 - 1 CCGCUGACGUGCAGAUUCUUGUGC------GGCGGCAGGCUGCCCAAAGGCGGCGAGCUGGCCACCUGCGACUGGGUCGCCUGCUGCGGCUGCACCGUCACCACCUUGCUGAUGAU ..(.(((((((((.........((------.(((((((((.(((((.(((.(((......))).))).....))))).))))))))).)))))).))))).).............. ( -51.20) >consensus GCAUUCACAUGCAGAUUCUUGUGC______GGCGGCAGGCUGCCCAAAGGCGGCGAGCUGGCCACCUGCGAUUGGGUCGCCUGCUGUGGCUGCACGGUAACCACCUUGCUAAUGAU ((((....((....))....)))).......(((((((((.(((((.(((.(((......))).))).....))))).)))))))))....(((.(((....))).)))....... (-29.69 = -28.87 + -0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:03 2006