Locus 4494

Sequence ID 2L_DroMel_CAF1
Location 12,878,741 – 12,878,837
Length 96
Max. P 0.912427
window7067

overview

Window 7

Location 12,878,741 – 12,878,837
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.22
Mean single sequence MFE -22.26
Consensus MFE -17.64
Energy contribution -19.90
Covariance contribution 2.26
Combinations/Pair 1.14
Mean z-score -1.96
Structure conservation index 0.79
SVM decision value 1.08
SVM RNA-class probability 0.912427
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12878741 96 + 22407834
UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG--AAGAGUGGAAGCAAUUUUGCUGCAAUUAUGGAAUUGGGAAAACAUUGUCC
.(((((((((........((((((.......))))))..(((((((--...(((...((((....))))...))).))))))))))))))))...... ( -21.80)
>DroSec_CAF1 57819 89 + 1
UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUGAGAAGAGUGGAAGCAAUUU---------UAUGGAAUUGGGAAAACAUUGUCC
.(((((((((........((((((.......))))))..((((((...((((.((....)).)))---------)..)))))))))))))))...... ( -19.90)
>DroSim_CAF1 60709 96 + 1
UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG--AAGAGUGGAAGCAAUUUUGCUGCAAUUAUGGAAUUGGGAAAACAUUGUCC
.(((((((((........((((((.......))))))..(((((((--...(((...((((....))))...))).))))))))))))))))...... ( -21.80)
>DroEre_CAF1 63858 96 + 1
UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG--AGGAGUGAAAGCAAUUUCGCUGCAAUUAUGGGAUUGGGAAAACAUUGUCC
.((((((((((....((.((((((.......)))))).........--.(.(((((((....))))))).).....))....))))))))))...... ( -25.10)
>DroYak_CAF1 59956 96 + 1
UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGCUCUG--AAGAGCGAAAGCAAUUUUGCUGCAAUUGAUGAAUAGGGAAAACAUUGUCC
.(((((((((........((((((.......))))))..(((...(--((..((....))..))).)))..............)))))))))...... ( -22.70)
>consensus
UUGUUUUCCUGUAAACAAGUUUAUAAACAAGGUAAACAAGGUUCUG__AAGAGUGGAAGCAAUUUUGCUGCAAUUAUGGAAUUGGGAAAACAUUGUCC
.(((((((((........((((((.......))))))..((((((......(((((((....)))))))........)))))))))))))))...... (-17.64 = -19.90 +   2.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:08 2006