Locus 4484

Sequence ID 2L_DroMel_CAF1
Location 12,842,781 – 12,842,872
Length 91
Max. P 0.848034
window7051

overview

Window 1

Location 12,842,781 – 12,842,872
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -23.98
Consensus MFE -10.32
Energy contribution -14.56
Covariance contribution 4.24
Combinations/Pair 1.05
Mean z-score -2.19
Structure conservation index 0.43
SVM decision value 0.78
SVM RNA-class probability 0.848034
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12842781 91 - 22407834
UAUAGCCCGUUUAGAAUGUGUGCUAAAAGAGUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU
..((((((((.....))).).))))........((((((.(((((...((.(((.......))).)).))))).))))))........... ( -26.10)
>DroSec_CAF1 23638 91 - 1
UAUAGCCCGCUUCGAAUGGGUGCUAAAAGAUUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU
..((((((.(.......))).))))........((((((.(((((...((.(((.......))).)).))))).))))))........... ( -28.00)
>DroSim_CAF1 25996 91 - 1
UAUAGCACGCUUGAAAUGGGUGCUAAAAGAUUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU
..((((((.(.......).))))))........((((((.(((((...((.(((.......))).)).))))).))))))........... ( -31.70)
>DroEre_CAF1 29155 73 - 1
UUCAGCCCGCUGCCAAUGGGUGCUAAAG-AGUCGGCUUUGAAAGGAUAGAGAGCUU-----------------UAGGGCCAAAAAUAAAAU
....((((((.(((....)))))...((-(((...(((((......))))).))))-----------------).))))............ ( -16.50)
>DroYak_CAF1 24538 74 - 1
UUUAGCUCGCCUCCAAUGGGUGCUAAAGAAGUCGGCUUUGAAAGGAUAGAGACCUU-----------------GAGGGGCAAAAAUAAAAU
((((((.(.((......))).)))))).......(((((..((((.......))))-----------------..)))))........... ( -17.60)
>consensus
UAUAGCCCGCUUCCAAUGGGUGCUAAAAGAGUCGGCUUUGAAGGGAUAGGGACCUUGAAUUGGUGUCGCCUUUGAGGGCCAAAAAUAAAAU
..((((.(.(.......).).))))........((((((.(((((...((.(((.......))).)).))))).))))))........... (-10.32 = -14.56 +   4.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:53 2006