| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,836,066 – 12,836,161 |
| Length | 95 |
| Max. P | 0.996584 |
| Location | 12,836,066 – 12,836,161 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 94.53 |
| Mean single sequence MFE | -26.94 |
| Consensus MFE | -25.80 |
| Energy contribution | -26.04 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.72 |
| SVM RNA-class probability | 0.996584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12836066 95 + 22407834 UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUGCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCUCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).(((((((...((((((((....))))))))....((((.....))))..))))))).........))) ( -26.20) >DroSec_CAF1 16843 95 + 1 UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUGCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).(((((((...((((((((....))))))))....((((.....))))..))))))).........))) ( -29.20) >DroSim_CAF1 18942 95 + 1 UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUUCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).((((.((...((((((((....))))))))....((((.....))))..)).)))).........))) ( -22.60) >DroEre_CAF1 22820 95 + 1 UAGCAAUCUAAUCAGGAACGCUUCCCGAAGUGCCCCCGCUCCGAUAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA .(((..(((.....)))..))).....(((((((...(((((((......)))))))....((((.....))))..)))))))............ ( -28.30) >DroYak_CAF1 17575 95 + 1 UAGCAAUCUAAUCGUGAACGCUUCCCAAAGUGCCACAGCUCCAAAUUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA .(((..((.......))..))).....(((((((...((((((((....))))))))....((((.....))))..)))))))............ ( -28.40) >consensus UAGCAAUCUAAUCGUGAACGCUUCGCAAAGUGCCCUAGCUCCGAAAUCCUUUGGGGUAUUUGGGCCAAGAGCCCUCGGCACUUAACCAACCAAGA ......(((....((((.....)))).(((((((...((((((((....))))))))....((((.....))))..))))))).........))) (-25.80 = -26.04 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:48 2006