Locus 448

Sequence ID 2L_DroMel_CAF1
Location 1,329,367 – 1,329,468
Length 101
Max. P 0.705022
window725

overview

Window 5

Location 1,329,367 – 1,329,468
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -30.63
Consensus MFE -19.28
Energy contribution -19.87
Covariance contribution 0.59
Combinations/Pair 1.32
Mean z-score -1.72
Structure conservation index 0.63
SVM decision value 0.36
SVM RNA-class probability 0.705022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1329367 101 - 22407834
GUUCCAGUCGAGUCUCGGCUGGAACUUGAGCUCCGUCGGAGUAUAGGUCUUGCCCUCCUCUAUGUCAAUGGUGUUGUCGUACUUGAUCUAGUGAUUCAAUU
((((((((((.....))))))))))(((((((((...))))).((((((.(((.(..(.((((....)))).)..)..)))...)))))).....)))).. ( -32.10)
>DroVir_CAF1 133694 94 - 1
AUUCCACUCGAGCCUGGGCUGGAAUUUCAAUUCAGUGGGGGUGUACGUCUUACCCUCCUCAAUUUCCAUUCCGUUCUCAAAACGCAUCUA------AAGU-
.........(((..(((..(((((.....(((.((.(((((((.......))))))))).))))))))..)))..)))............------....- ( -23.70)
>DroPse_CAF1 121772 95 - 1
AUUCCAGUCGAGUUUCGGCUGGAACUUCAGCUCUUUGGGGGUAUACGUCUUGCCCUCCUCAAUGUCGAUGGCGUUGUCGAAUUUCACCUG------CAAUU
.(((((((((.....))))))))).....((.....(((((((.......)))))((..((((((.....))))))..))......)).)------).... ( -31.00)
>DroSim_CAF1 90246 100 - 1
GUUCCAGUCGAGUCUCGGCUGGAACUUGAGCUCCGUCGGAGUAUAGGUCUUGCCCUCCUCGAUGUCAAUGGUGUUGUCGUACUUGAUCUAGUGAU-CAAUU
((((((((((.....))))))))))(((((((((...))))).((((((..(....(..(((..(.....)..)))..)..)..))))))....)-))).. ( -32.20)
>DroEre_CAF1 99814 100 - 1
AUUCCAGUCGAGUCGCGGCUGGAACUUCAGCUCCGUGGGAGUAUAGGUCUUGCCCUCCUCGAUAUCAAAGGUGUUGUCGUACUUGACCUAGUGAU-CAAAU
.(((((((((.....)))))))))..((((((((...))))).((((((..(....(..((((((.....))))))..)..)..)))))).))).-..... ( -31.70)
>DroYak_CAF1 90212 100 - 1
AUUCCAGUCGAGUCUCGGCUGGAACUUGAGCUCCGUGGGAGUAUAGGUCUUGCCCUCCUCUAUAUCGAAGGUGUUGUCGUACUUGAUCUAGUGAG-GAAAU
..((((((((.....))))))))(((((.(((((...))))).))))).....((((..(((.((((..((((......)))))))).))).)))-).... ( -33.10)
>consensus
AUUCCAGUCGAGUCUCGGCUGGAACUUCAGCUCCGUGGGAGUAUAGGUCUUGCCCUCCUCAAUGUCAAUGGUGUUGUCGUACUUGAUCUAGUGAU_CAAUU
.(((((((((.....))))))))).....((((.....)))).((((((..........((((((.....))))))........))))))........... (-19.28 = -19.87 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:28 2006