Locus 4476

Sequence ID 2L_DroMel_CAF1
Location 12,825,558 – 12,825,651
Length 93
Max. P 0.663454
window7041

overview

Window 1

Location 12,825,558 – 12,825,651
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 85.36
Mean single sequence MFE -23.15
Consensus MFE -18.99
Energy contribution -18.68
Covariance contribution -0.30
Combinations/Pair 1.21
Mean z-score -1.83
Structure conservation index 0.82
SVM decision value 0.27
SVM RNA-class probability 0.663454
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12825558 93 + 22407834
AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAACGGAAGUUGGCAAGAAAAAAAAAAAAAAAACGCUGAUCGGUAGCAAACGAUCAACAGU
....((((((.....(....).....))))))((((....))))......................(.((((((........)))))).)... ( -23.50)
>DroSec_CAF1 6543 84 + 1
AACUCGGCCACUAUGCAAAUGACUUCUGGCCGCAACGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGUAGCGAAUGAUCAACAGU
....((((((.....(....).....))))))((((....))))........---------.....(.((((((........)))))).)... ( -21.00)
>DroSim_CAF1 5984 84 + 1
AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAACGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGUAGCAAACGAUCAACAGU
....((((((.....(....).....))))))((((....))))........---------.....(.((((((........)))))).)... ( -23.50)
>DroEre_CAF1 12440 84 + 1
AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAGCGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGUAGCGAAUGAUCAACAGU
....((((((.....(....).....))))))((((....))))........---------.....(.((((((........)))))).)... ( -21.00)
>DroYak_CAF1 6608 84 + 1
AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAGCGGAAGUUGGCAAGAAA---------AAAACGCUGAUCGGCAGCGAACGAUCAAGAGU
.(((((((((.....(....).....)))))(((((....))).))......---------.......((((((........)))))).)))) ( -25.60)
>DroAna_CAF1 31645 84 + 1
AACUCGGCCACUAUGCAAAUAUUUUCUGGGAGCAGCGGAAGUUGGGUAGCAA---------AAAGUGCUGAUCGCAGCCAGGGGAUCAGCCAC
.....(((...(((....)))((..((((..(((((....)))(..(((((.---------....)))))..)))..))))..))...))).. ( -24.30)
>consensus
AACUCGGCCACUAUGCAAAUGACUUUUGGCCGCAACGGAAGUUGGCAAGAAA_________AAAACGCUGAUCGGUAGCAAACGAUCAACAGU
....((((((.....(....).....))))))((((....))))....................((..((((((........))))))...)) (-18.99 = -18.68 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:43 2006