Locus 4471

Sequence ID 2L_DroMel_CAF1
Location 12,812,755 – 12,812,875
Length 120
Max. P 0.792347
window7033

overview

Window 3

Location 12,812,755 – 12,812,875
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.39
Mean single sequence MFE -30.40
Consensus MFE -22.18
Energy contribution -23.42
Covariance contribution 1.24
Combinations/Pair 1.09
Mean z-score -2.07
Structure conservation index 0.73
SVM decision value 0.59
SVM RNA-class probability 0.792347
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12812755 120 - 22407834
AAUAACAAGGCCGCAAUGUUUUCGAGUAAAGGCCAUGGGCAUAUAAAGAUCCUUGUCUGCAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGACGAACUCAUUAAA
..............((((..((((.(((((((...((((....(((((((((..(..(((.((((....)))))))..)...)))))))))..)))))))))))...))))..))))... ( -32.50)
>DroSec_CAF1 78727 109 - 1
AAUA-----------AUGUUUUCAAGUGAAGGCUAUGGGCAUAUAAAGAUCCUUGUCUACAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGCCGAACUCAUUAAA
..((-----------(((..(((..(((((((...((((....(((((((((.........((((....))))((.....)))))))))))..)))))))))))....)))..))))).. ( -28.70)
>DroSim_CAF1 82038 109 - 1
AAUA-----------AUGUUUUCGAUUGAAGGCUAUGGGCAUAUAAAGAUCCUUGUCUACAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGCCGAACUCAUUAAA
..((-----------(((..((((..((((((...((((....(((((((((.........((((....))))((.....)))))))))))..))))))))))....))))..))))).. ( -28.20)
>DroEre_CAF1 82068 120 - 1
AAUAACAAGGCCACAAUGUUUUCGAGGAAAGGCUAUGGACAUAUAAAGAUCCUUGUCUAUAUGAGGUCCUUCAGCAUCCUGGGGAUUUUUCCACCCACCUUUACAGUCGAACUCAUUAAA
..............((((..((((((((...(((..((((.((((.((((....)))).))))..))))...))).))).(((((....))).))...........)))))..))))... ( -28.10)
>DroYak_CAF1 82475 120 - 1
AAUAACAAGGCCGCAAUGUUUUCGAUUGAGGGCUAUGGGCAUAUAAAGAUCCUUGUCUAUAUGAGGUCCUUCAGCAUCGCGGGGAUUUUUCCACCCACCUUUACAGUCGAACUCAUUAAA
..............((((..((((((((((((...((((.....((((((((((((.....((((....)))).....))))))))))))...))))))))..))))))))..))))... ( -34.50)
>consensus
AAUAACAAGGCC_CAAUGUUUUCGAGUGAAGGCUAUGGGCAUAUAAAGAUCCUUGUCUACAUGAGGUCCUUCAGCAUCCUGCGGAUUUUUGCACCCACCUUUACAGCCGAACUCAUUAAA
..............((((..((((.(((((((...((((....(((((((((..(......((((....))))......)..)))))))))..)))))))))))...))))..))))... (-22.18 = -23.42 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:36 2006