| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,324,419 – 1,324,533 |
| Length | 114 |
| Max. P | 0.962923 |
| Location | 1,324,419 – 1,324,533 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.38 |
| Mean single sequence MFE | -26.29 |
| Consensus MFE | -17.28 |
| Energy contribution | -17.06 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.962923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1324419 114 - 22407834 GCCACAUUUCUGGCAUCACUAUUAGGGAGGGGGUGAGUCUAAAGGUAUACAUCAAUUCUUUCUUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGCU-- ((((((.....(....)((((((((((..(((((..((((((((((.(((.................)))))))))))))...)))))....))))))))))...))))))...-- ( -28.13) >DroSec_CAF1 81829 87 - 1 GCCACAUUUCUUGCAU----------------------CUAAAGGUAUGCAUCAGUUC----UUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGC--- ((((((....(..(((----------------------((((((((.(((........----.....))))))))))))))..).....(((((.....))))).))))))..--- ( -25.92) >DroSim_CAF1 85323 90 - 1 GCCACAUUUCCUGCAU----------------------CUAAAGGUAUGCAUCAGUUC----UUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGCUCC ((((((...((.((((----------------------((((((((.(((........----.....))))))))))))))).........((....))))....))))))..... ( -24.82) >consensus GCCACAUUUCUUGCAU______________________CUAAAGGUAUGCAUCAGUUC____UUUUAGUAACUUUUAGAUGUGAUUUUAAAACUCUGGUGGUUUCUGUGGCGCU__ ((((((................................((((((((.(((.................)))))))))))...........(((((.....))))).))))))..... (-17.28 = -17.06 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:27 2006