Locus 4469

Sequence ID 2L_DroMel_CAF1
Location 12,810,518 – 12,810,628
Length 110
Max. P 0.704707
window7030

overview

Window 0

Location 12,810,518 – 12,810,628
Length 110
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 96.97
Mean single sequence MFE -23.17
Consensus MFE -22.50
Energy contribution -22.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.97
SVM decision value 0.36
SVM RNA-class probability 0.704707
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12810518 110 - 22407834
UAUAUUCAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUAUUUUUAGUAUAGAACUAUGAUUAAAUU
..((.((((((((.((((.(..((..(((....)))))..).))))(((((((((((.........)))))))))))))))).....((((.....))))))).)).... ( -24.50)
>DroSec_CAF1 76267 110 - 1
UAUAUUAAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUACUUUUAUUACCGAACUAUGAUUAAAUU
........(((((.((((.(..((..(((....)))))..).))))(((((((((((.........))))))))))))))))............................ ( -22.50)
>DroSim_CAF1 79512 110 - 1
UAUAUUAAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUACUUUUAUUACAGAACUAUGAUUAAAUU
........(((((.((((.(..((..(((....)))))..).))))(((((((((((.........))))))))))))))))............................ ( -22.50)
>consensus
UAUAUUAAGCACUAGGGUGUUGGAAAUCUCUUAAGAUCUGAAGCUCGAUUGAUUUUUAAUCUUUUAGGAAAUCAAUCAGUGUACUUUUAUUACAGAACUAUGAUUAAAUU
........(((((.((((.(..((..(((....)))))..).))))(((((((((((.........))))))))))))))))............................ (-22.50 = -22.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:32 2006