Locus 4466

Sequence ID 2L_DroMel_CAF1
Location 12,808,360 – 12,808,469
Length 109
Max. P 0.697137
window7026

overview

Window 6

Location 12,808,360 – 12,808,469
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 96.32
Mean single sequence MFE -21.88
Consensus MFE -19.50
Energy contribution -19.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.89
SVM decision value 0.34
SVM RNA-class probability 0.697137
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12808360 109 - 22407834
CUUUGGUCGUUGUUCGGUUGCUUACUGCCCGCAGCAAAUGCCAAAAAUUGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCUAAAAAACACAAAAAAA
.((((((..(((((((((((((........((.((((.(......).)))).))................((.....)).))).)))))))).))...)).)))).... ( -21.00)
>DroSec_CAF1 74110 108 - 1
CUUUGGUCGUUGUUCGGUUGCUUACUACCCGCAGCAAAUGCCAAAAAUUGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCAA-AAAACACAAAAAAA
.((((((..(((((((((((((........((.((((.(......).)))).))................((.....)).))).))))))))))-...)).)))).... ( -24.80)
>DroSim_CAF1 77355 106 - 1
CUUUGGUCGUUGUUCGGUUGCUUACUGCCCGCAGCAAAUGCCAAAAAUCGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCUA-AAAACACAAAAA--
.((((((..(((((((((((((........((.((..............)).))................((.....)).))).)))))))).)-)..)).))))..-- ( -19.84)
>consensus
CUUUGGUCGUUGUUCGGUUGCUUACUGCCCGCAGCAAAUGCCAAAAAUUGCCGCAAACAAAAACAAUACAGCAAAACGCCAGCAAACCGGGCUA_AAAACACAAAAAAA
.((((((..(.(((((((((((........((.((((.(......).)))).))................((.....)).))).))))))))...)..)).)))).... (-19.50 = -19.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:28 2006