Locus 4463

Sequence ID 2L_DroMel_CAF1
Location 12,807,377 – 12,807,474
Length 97
Max. P 0.500000
window7020

overview

Window 0

Location 12,807,377 – 12,807,474
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 93.81
Mean single sequence MFE -23.50
Consensus MFE -22.49
Energy contribution -22.50
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.96
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12807377 97 - 22407834
UAGUUUCCACUUGGCAAUUAGCAGUUAAUUAGCCAAUAACUAAUAGUCGUCAGUUGGAAAGUGCUUUUGUUCGGGGAAUGUCACCUGGAAUUAAUUA
((.((((((.(((((.((((..(((((.........)))))..)))).))))).)))))).))......((((((........))))))........ ( -24.00)
>DroSec_CAF1 73112 96 - 1
UAGUUUUCACUUGGCAAUUAGGAGUUAAUUAGCCAAUAACUAAUAGUCGUCAGCUGGAAAGUGCUUUU-UUUGGGGAAUGUCUCCUGGAAUUAAAUA
((.((((((.(((((.((((..(((((.........)))))..)))).))))).)))))).))....(-((..(((......)))..)))....... ( -21.10)
>DroSim_CAF1 76382 97 - 1
UAGUUUCCACUUGGCAAUUAGCAGUUAAUUAGCCAAUAACUAUUGGUCGUCAGCUGGAAAGUGCUUUUGUUCGGGGAAUGUCUCCUGGAAUUAAUUA
((.((((((.(((((((((((...)))))).((((((....)))))).))))).)))))).)).....((((.((((.....)))).))))...... ( -25.40)
>consensus
UAGUUUCCACUUGGCAAUUAGCAGUUAAUUAGCCAAUAACUAAUAGUCGUCAGCUGGAAAGUGCUUUUGUUCGGGGAAUGUCUCCUGGAAUUAAUUA
((.((((((.(((((.((((..(((((.........)))))..)))).))))).)))))).)).....((((.((((.....)))).))))...... (-22.49 = -22.50 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:23 2006