Locus 4459

Sequence ID 2L_DroMel_CAF1
Location 12,803,964 – 12,804,064
Length 100
Max. P 0.990729
window7011

overview

Window 1

Location 12,803,964 – 12,804,064
Length 100
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 84.34
Mean single sequence MFE -26.30
Consensus MFE -26.28
Energy contribution -25.83
Covariance contribution -0.44
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 1.00
SVM decision value 2.23
SVM RNA-class probability 0.990729
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12803964 100 + 22407834
-----------UUUUCUCCAAUUUAUGUGUAAUACAACAUUUCUCCCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUUGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC
-----------.............((((........)))).......((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... ( -26.60)
>DroSim_CAF1 71810 110 + 1
-AUUUACCUUUUUUUUUUUAAUUUAAGUAAGAUAAAACUUUUCUCUCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUUGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC
-.........................(..(((.........)))..)((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... ( -26.00)
>DroYak_CAF1 72815 111 + 1
AAACGAAUUUUUUUUUUUCAAUUUAAGUUUAAGACAACUUUUCUCUCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUCGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC
........................(((((......))))).......((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... ( -26.30)
>consensus
_A___A__UUUUUUUUUUCAAUUUAAGUAUAAUACAACUUUUCUCUCACUGUAGAGCGGGCUCUGUUUGGCCUGCGGUUUGCCUAACGCGUUGUUUGCUCUGCGGUUCCUC
........................((((........)))).......((((((((((((((.(((((.(((.........))).)))).)..))))))))))))))..... (-26.28 = -25.83 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:14 2006