| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,779,884 – 12,779,985 |
| Length | 101 |
| Max. P | 0.660186 |
| Location | 12,779,884 – 12,779,985 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.24 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -16.29 |
| Energy contribution | -18.85 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.660186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12779884 101 - 22407834 UGUGUGUGUGUGAUGGGCUUGGCCAGAGCGCCCACUCGCGCACAAUCCUUUCG-AUGCUCCAAAUGAAAAGAUAAAAUGAAUUCGAGUGAAAUUAAAAAUCA ....((((((((((((((...((....))))))).)))))))))(((.(((((-.(......).))))).)))............................. ( -24.90) >DroPse_CAF1 81179 82 - 1 --------UAGAGGGGGCGUGGCCGCACAACCCGUUCG--UUCGAUGUUUUCGAAUGUUUGAAAUGAAAAG----------UUCAGGUGAAAUUAUAAAUUA --------..((.(((..(((....)))..))).))((--(((((.....)))))))((((((.(....).----------))))))............... ( -18.30) >DroSec_CAF1 56776 100 - 1 -GUGUGUGUGUGGUGGGCGUGGCCAGAGCGCCCACUCGCGCACAAUCCUUUCG-AUGCUCCAAAUGAAAAGAUAAAAUGAAUUCGAGUGAAAUUAAAAAUCA -.((((((((.(((((((((.......)))))))))))))))))(((.(((((-.(......).))))).)))............................. ( -31.40) >DroSim_CAF1 57423 100 - 1 -GUGUGUGUGUGGUGGGCGUGGCCAGAGCGCCCACUCGCGCACAAUCCUUUCG-AUGCUCCAAAUGAAAAGAUAAAAUGAAUUCGAGUGAAAUUAAAAAUCA -.((((((((.(((((((((.......)))))))))))))))))(((.(((((-.(......).))))).)))............................. ( -31.40) >DroEre_CAF1 58727 98 - 1 ---GUGUGUGUGGUGGGCGUGGCCGCAGCGCCCACUCGCGCACAAUCCUUUCG-CUGCUCCAAAUGAAAAGUUGAAAUGAAUUCGUGUGAAAUUAAAAAUCA ---.((((((((((((((((.......)))))))).))))))))....(((((-(.....(((.(....).)))..(((....))))))))).......... ( -33.00) >DroYak_CAF1 59212 91 - 1 ---GUGU-------GGGCGUGGCCACAGCGCCCACAAGCGCACAAUCCUUUCG-AUGCUCUAAAUGGAAAGAUUAAAUGAAUUCGAGUGAAAUUAAAAAUCA ---.(((-------((((((.......)))))))))....(((....(((((.-((.......)).)))))......((....)).)))............. ( -23.40) >consensus ___GUGUGUGUGGUGGGCGUGGCCACAGCGCCCACUCGCGCACAAUCCUUUCG_AUGCUCCAAAUGAAAAGAUAAAAUGAAUUCGAGUGAAAUUAAAAAUCA ...(((((((.(((((((((.......))))))))))))))))........................................................... (-16.29 = -18.85 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:01 2006