Locus 445

Sequence ID 2L_DroMel_CAF1
Location 1,323,919 – 1,324,034
Length 115
Max. P 0.664195
window721

overview

Window 1

Location 1,323,919 – 1,324,034
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.95
Mean single sequence MFE -29.14
Consensus MFE -18.52
Energy contribution -20.07
Covariance contribution 1.55
Combinations/Pair 1.16
Mean z-score -1.50
Structure conservation index 0.64
SVM decision value 0.28
SVM RNA-class probability 0.664195
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1323919 115 - 22407834
CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG-----AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGUGUGUGUGUGCAAAUGCAUUUACCA
.(((((..((((.......(((.....)))....-----..))))....)))))....(((((((((((((....)))))))))..(((((..(....)..)))))...))))....... ( -32.62)
>DroSec_CAF1 81339 111 - 1
CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG-----AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU----GUGUGCAAAUGCAUUUACCA
.(((((..((((.......(((.....)))....-----..))))....)))))....(((((((((((((....)))))))))..((((((....----))))))...))))....... ( -31.92)
>DroSim_CAF1 84827 111 - 1
CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG-----AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUACAUAAGCAUAUGUGU----GUGUGCAAAUGCAUUUACCA
.(((((..((((.......(((.....)))....-----..))))....))))).......(((..(((.....((.((((((((......)))))----))).)).....)))..))). ( -32.62)
>DroEre_CAF1 94508 87 - 1
CAGCAGUGGG-----------------------------AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU----GUGUGCAAAUGCACUUACCA
(((.(((((.-----------------------------....))))).)))......(((.(((((((((....)))))))))..)))..((.((----(.((((....)))).))))) ( -23.60)
>DroYak_CAF1 84613 111 - 1
CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAA-----AGUUCUAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU----GUGUGCAACUGCACUUACCA
..(((((..((((.((((.(((.....)))((((-----(......))))).)))).)))).(((((((((....)))))))))..((((((....----)))))).)))))........ ( -31.90)
>DroAna_CAF1 107593 108 - 1
AGACGG--AGCAUUAGAUAAGGAAAGCACUAGAGAGAAAAGCGAAAUUUCUGUUUUAUUGCGGUUUAUGAAACGGUUCAUAAAUAAGUAUAUGU----------UCGGAUGCAUUUUCGG
...(((--((((((.((........(((.((((((((((.......))))).))))).))).(((((((((....)))))))))..........----------)).)))))...)))). ( -22.20)
>consensus
CAGCAGUGGGCGAAAGAGAGGCAAGAUGCCAGAG_____AGCGCCAUUUCUGUUUUAUUGCGGUUUAUGAAUCGGUUCAUAAAUAAGCAUAUGUGU____GUGUGCAAAUGCAUUUACCA
(((.(((((((........(((.....)))..........)).))))).)))......(((((((((((((....)))))))))..((((((........))))))...))))....... (-18.52 = -20.07 +   1.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:23 2006