Locus 4449

Sequence ID 2L_DroMel_CAF1
Location 12,776,680 – 12,776,793
Length 113
Max. P 0.500000
window6996

overview

Window 6

Location 12,776,680 – 12,776,793
Length 113
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.92
Mean single sequence MFE -28.88
Consensus MFE -19.99
Energy contribution -20.38
Covariance contribution 0.39
Combinations/Pair 1.25
Mean z-score -1.31
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12776680 113 - 22407834
GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA
((((.((.((((((....(((.((((.....)))).))).......)))))).)))))).((((..((((((((..---......))))))))....-...))))............ ( -29.80)
>DroSec_CAF1 53640 112 - 1
GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGU-UCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA
((((.((.((((((....(((.((((.....)))).))).......)))))).)))))).((((......-...((---(((....)))))......-...))))............ ( -29.87)
>DroSim_CAF1 54232 113 - 1
GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA
((((.((.((((((....(((.((((.....)))).))).......)))))).)))))).((((..((((((((..---......))))))))....-...))))............ ( -29.80)
>DroEre_CAF1 55777 113 - 1
GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUGCCCAGAAACAUGGCACACGUUUCAGC---UUCACAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA
.....((((((((((((.(((.((((.....)))).))).......))))))..(((((.((...)).))))).((---(((....)))))......-...)))))).......... ( -30.40)
>DroYak_CAF1 56054 113 - 1
GCUUAUUUGGUGACCAUGUUAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC---UUCAUAUGAGGCGUUAUA-UUAGCCAAGACACAUUCGA
((((....((((((...(((((((((.....))).)))))).....))))))...)))).((((..((((((((..---......))))))))....-...))))............ ( -32.90)
>DroAna_CAF1 53368 92 - 1
GCUUACUGGGCGGCAAUGCCGUGUGAUUAUUUCG--------------------AAAGCAUAGAACACAUUUCAAGACGCACAGAUGGGGGAUUGGAGAUAGCCAAGGA-----CGA
.....((.((((((...)))((((..((((..(.--------------------...).)))).)))).((((((..(.(.(....)).)..))))))...))).))..-----... ( -20.50)
>consensus
GCUUACUUGGUGGCAAUGUAAAGCGAUUAUUUCGCCUUAACUUCAAGUUACCCAGGAGCAUGGCACACGUUUCAGC___UUCACAUGAGGCGUUAUA_UUAGCCAAGACACAUUCGA
.....((((((.((.((((...((((.....))))..((((.....)))).......)))).))..((((((((...........))))))))........)))))).......... (-19.99 = -20.38 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:59 2006