Locus 4448

Sequence ID 2L_DroMel_CAF1
Location 12,774,357 – 12,774,451
Length 94
Max. P 0.560693
window6995

overview

Window 5

Location 12,774,357 – 12,774,451
Length 94
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 81.77
Mean single sequence MFE -38.27
Consensus MFE -20.00
Energy contribution -20.06
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -2.39
Structure conservation index 0.52
SVM decision value 0.05
SVM RNA-class probability 0.560693
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12774357 94 - 22407834
UCUGAGGGUGACC-C-UCGAG--------GCACCGCUGGCAAACCAAUAGAA-AAAUGUUUGUUUGUGGCAGC-AUC-------AGGA----GCUGGAGCAGCAGUUGGUGAUGUUG
((((((((...))-)-)).))--------)..((((..((((((........-....))))))..))))((((-(((-------(..(----((((......)))))..)))))))) ( -32.90)
>DroPse_CAF1 70762 100 - 1
UCUGAGGGUGACCCC-UCGGG--------UUGCUGCUGGCAAACCAAUAGAAAAAAUGUUUGUUUGCGGCUGCCGUC-------AGGAGCA-GCAGGAGCAGCAGGAGCAGCAGUUG
.(((((((....)))-))))(--------((.((((((((((((.((((.......)))).)))))).((((((...-------..).)))-)).....)))))).)))........ ( -42.70)
>DroEre_CAF1 53426 94 - 1
UCUGAGGGUGACC-C-UCGGG--------GCUCCGCUGGCAAACCAAUAGAA-AAAUGUUUGUUUGUGGCAGC-AUC-------GGGA----GCUGGAGCAGCAGUUGGUGAUGUUG
((((((((...))-)-)))))--------...((((..((((((........-....))))))..))))((((-(((-------(..(----((((......)))))..)))))))) ( -35.20)
>DroYak_CAF1 53749 94 - 1
UCUGAGGGUGACC-C-UCGGG--------GCUCCGCUGGCAAACCAAUAGAA-AAAUGUUUGUUUGUGGCAGC-AUC-------AGGA----GCCGGAGCAGCAGUUGCUGAUGUUG
.(((((((...))-)-))))(--------(((((((((((((((.((((...-...)))).))))))..))))-...-------.)))----)))....((((....))))...... ( -38.80)
>DroAna_CAF1 51200 114 - 1
UCUGAGGGUGACC-CCUCCGGGAGUCUCUGCUCUGCUGGCAAACCAAUAGAA-AAAUGUUUGUUUGCGGCAGC-AUCAGGCAUCAGGAGCAAGUCGGAGCAGCAGUUGGUGCCAUUG
(((((((....))-.((((..((((((.((((((((..((((((........-....))))))..)))).)))-)..)))).)).))))....)))))(((.(....).)))..... ( -39.40)
>DroPer_CAF1 71955 100 - 1
UCUGAGGGUGACCCC-UCGGG--------GUGCUGCUGGCAAACCAAUAGAAAAAAUGUUUGUUUGCGGCUGCCGUC-------AGGAGCA-GCAGGAGCAGCAGGAGCAGCAGUUG
.(((((((....)))-))))(--------.(.((((((((((((.((((.......)))).)))))).((((((...-------..).)))-)).....)))))).).)........ ( -40.60)
>consensus
UCUGAGGGUGACC_C_UCGGG________GCUCCGCUGGCAAACCAAUAGAA_AAAUGUUUGUUUGCGGCAGC_AUC_______AGGA____GCAGGAGCAGCAGUUGCUGAUGUUG
.((((((....))...))))..............((((((((((.((((.......)))).))))))..((((...................))))...)))).............. (-20.00 = -20.06 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:58 2006