Locus 4446

Sequence ID 2L_DroMel_CAF1
Location 12,769,293 – 12,769,385
Length 92
Max. P 0.856467
window6992

overview

Window 2

Location 12,769,293 – 12,769,385
Length 92
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.11
Mean single sequence MFE -37.22
Consensus MFE -23.55
Energy contribution -23.05
Covariance contribution -0.50
Combinations/Pair 1.12
Mean z-score -2.81
Structure conservation index 0.63
SVM decision value 0.81
SVM RNA-class probability 0.856467
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12769293 92 + 22407834
ACGUUCAUCA--UCGCUUCGUUUCACUGUGCAAAUGUUUGUGCAGCACUAGAAAUGUGUGUUGCAGACGCAGUGCAGCAGGA--GCAGGUGGG------------GAC
..((((.(((--((((((((((.((((((((((....)))((((((((((....)).))))))))..))))))).))).)))--)).))))))------------))) ( -37.10)
>DroSec_CAF1 46303 100 + 1
ACGUUCAUCA--UCGCUUCGUUUCACUGUGCAAAUGUUUGUGCAGCACUAGAAAUGUGUGUUGCAGACGCAGUGCAGCAGGA--GCAGGGGGGUG----GGGGCAGGC
..((((.(((--((.((..(((((.(((..(...(((.(.((((((((((....)).)))))))).).))))..)))..)))--))..)).))))----))))).... ( -39.80)
>DroSim_CAF1 46548 99 + 1
ACGUUCAUCA--UCGCUUCGUUUCACUGUGCAAAUGUUUGUGCAGCACUAGAAAUGUGUGUUGCAGACGCAGUGCAGCAGGA--GCAGGGGGAUG----UGGGU-GGC
.((..((.((--((.((..(((((.(((..(...(((.(.((((((((((....)).)))))))).).))))..)))..)))--))..)).))))----))..)-).. ( -40.90)
>DroEre_CAF1 48243 80 + 1
--------------GCUUCGUUUCACUGUGCAAAUGUUUGUGCAGCACUAGAAAUGUGUGUUGCAGACGCAGUGCAGCAGGA--GCGGGCGCG------------GGC
--------------((((((((((.(((..(...(((.(.((((((((((....)).)))))))).).))))..)))..)))--))))).)).------------... ( -32.10)
>DroYak_CAF1 48485 89 + 1
ACGUUCAUCA--UCGCUUCGUUUCGCUGUGCAAAUGUUUGUGCAGCACUAGAAAUGUGUGUUGCAGACGCAGUGCAGCAGGA--GCGGG---G------------GGC
..........--.(.(((((((((((((..(...(((.(.((((((((((....)).)))))))).).))))..)))).)))--)))))---)------------.). ( -37.10)
>DroAna_CAF1 46273 107 + 1
AUUUUCAUCAGCUUGCUUCGUUUCACUGUGCAAAUGUUUGUGCAGCACUCGAAAUGUGUGCUGCAGACGCAGUGCAGCAGCAUGGUAGGGGUUUGCCAAUGGGU-UGG
...(((((..((..(((((...((((((((((..(((.(.((((((((.(.....).)))))))).).))).)))).)))..)))..)))))..))..))))).-... ( -36.30)
>consensus
ACGUUCAUCA__UCGCUUCGUUUCACUGUGCAAAUGUUUGUGCAGCACUAGAAAUGUGUGUUGCAGACGCAGUGCAGCAGGA__GCAGGGGGG____________GGC
...............(((.((....(((((((..(((.(.((((((((.........)))))))).).))).)))).)))....)))))................... (-23.55 = -23.05 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:55 2006