Locus 4442

Sequence ID 2L_DroMel_CAF1
Location 12,767,155 – 12,767,251
Length 96
Max. P 0.854733
window6987

overview

Window 7

Location 12,767,155 – 12,767,251
Length 96
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 77.93
Mean single sequence MFE -29.32
Consensus MFE -17.90
Energy contribution -17.10
Covariance contribution -0.80
Combinations/Pair 1.44
Mean z-score -1.84
Structure conservation index 0.61
SVM decision value 0.80
SVM RNA-class probability 0.854733
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12767155 96 + 22407834
-------------------UGUGCUGUGGGUGGAUAAUGAAACCGUAGC--AAAUAAAUCAAUAAUUUUUACUCUUUUGUGAAUGACCCGCGGCUACUUUGAGU-UUGUCUCUGUUUU
-------------------.(((((((((((.(...(..(((..((((.--((((.........))))))))..)))..)...).))))))))).))...(((.-....)))...... ( -22.10)
>DroPse_CAF1 59415 106 + 1
GUGGGGGC----------AGGAGUUGUGGGCGAGUAAUGAAACCAUUGC--AAAUAAAUCAAUAAUUUGUACUCUUUUGUGCAGUGCCCGCGGCUACUUUGUGUGCUGUCCCUGUUCC
(..(((((----------((.(((((((((((.((((((....))))))--...............((((((......)))))))))))))))))((.....)).)))))))..)... ( -42.40)
>DroEre_CAF1 46127 96 + 1
-------------------UCAGCUGUGGGUGGAUAAUGAAACCGUAGC--AAAUAAAUCAAUAAUUUUUACUCUUUUGUGAAUUGCCCGUGGCUACUUUGAGU-UUGUCUCUGUUUU
-------------------..(((..((((..(...(..(((..((((.--((((.........))))))))..)))..)...)..))))..))).....(((.-....)))...... ( -21.40)
>DroYak_CAF1 45312 96 + 1
-------------------UCAGCUGUGGGUGGAUAAUGAAACCGUAGC--AAAUAAAUCAAUAAUUUUUACUCUUUUGUGAACUGCCCGCGGCUACUUUGAGU-UUGUCUCUGCUUU
-------------------..(((((((((..(...(..(((..((((.--((((.........))))))))..)))..)...)..))))))))).....(((.-....)))...... ( -25.50)
>DroAna_CAF1 44062 98 + 1
-------------------GCUGCAGUGGGAGGAUAAUGAAACCAUGGGUAAAAAAAAUCAAUAAUUUAUACUCUUUUGUAAAACGCCCGCGGCUACUUUGUGU-UUGUCUCUGUGCU
-------------------((.((((.(((((.((((.....((.(((((.....((((.....)))).(((......)))....))))).)).....)))).)-)).)).)))))). ( -17.80)
>DroPer_CAF1 59113 113 + 1
GGGGGGGGGGGGAGUGCUGGGAGUUGUGGGCGAGUAAUGAAACCAUUGC--AAAUAAAUCAAUAAUUUGUACUCUUUUGUGCAGUGCCCGCGGCUACUUUGUGU---GUCCCUGUUCC
..((((.((((..(..(..(((((((((((((.((((((....))))))--...............((((((......))))))))))))))))).))..)..)---..)))).)))) ( -46.70)
>consensus
___________________GCAGCUGUGGGUGGAUAAUGAAACCAUAGC__AAAUAAAUCAAUAAUUUUUACUCUUUUGUGAAGUGCCCGCGGCUACUUUGAGU_UUGUCUCUGUUCU
......................((((((((((....(((....))).....................(((((......))))).))))))))))........................ (-17.90 = -17.10 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:50 2006