| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,321,198 – 1,321,334 |
| Length | 136 |
| Max. P | 0.999551 |
| Location | 1,321,198 – 1,321,297 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 89.89 |
| Mean single sequence MFE | -28.53 |
| Consensus MFE | -25.83 |
| Energy contribution | -26.33 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.85 |
| Structure conservation index | 0.91 |
| SVM decision value | 3.71 |
| SVM RNA-class probability | 0.999551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1321198 99 + 22407834 AAAACAAAGAACGUUAAACGUCUAUGCAUGCAAAAAUGCUAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGA ...........(((((((.((((..((((......))))...))))...)))))))..(((.(((....))).)))...(((((((.....))))))). ( -28.50) >DroSec_CAF1 78647 98 + 1 AAAACAAAGAACGUUAAACGUCUAUGCAUGCAAAAAUGCUAAAGAUUU-UUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGA ...........(((((((.((((..((((......))))...))))..-)))))))..(((.(((....))).)))...(((((((.....))))))). ( -28.90) >DroSim_CAF1 82129 99 + 1 AAAACAAAGAACGUUAAACGUCUAUGCAUGCAAAAAUGCUAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGA ...........(((((((.((((..((((......))))...))))...)))))))..(((.(((....))).)))...(((((((.....))))))). ( -28.50) >DroEre_CAF1 91842 98 + 1 AAAACAAAGAACGUUAAACAUCUAUGCAUGCAAGAAUGCUAGAGAUUU-UUUAAUGAAGCCAGGCACACGCCUGGCACACAAAUCUCCCUGGGAUUUGA ...........(((((((.((((..((((......))))...))))..-)))))))..(((((((....)))))))...(((((((.....))))))). ( -34.30) >DroYak_CAF1 81838 99 + 1 AAAACAAAGAACGUUAAACAUCUAUGCAUGCAAAAAUGCCAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGA ...........(((((((.((((..((((......))))...))))...)))))))..(((.(((....))).)))...(((((((.....))))))). ( -27.50) >DroAna_CAF1 104906 89 + 1 AAG---AGG-------AGUGUCUAUGCAUGGAAAAAUGCAAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCCCGUGGGCAAAUCUCUCUGGGAUUUGA ...---(((-------((.((((.(((((......)))))..)))).)))))......(((((((....)))....))))((((((.....)))))).. ( -23.50) >consensus AAAACAAAGAACGUUAAACGUCUAUGCAUGCAAAAAUGCUAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGA ...........(((((((.((((..((((......))))...))))...)))))))..(((.(((....))).)))...(((((((.....))))))). (-25.83 = -26.33 + 0.50)
| Location | 1,321,226 – 1,321,334 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.15 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -16.19 |
| Energy contribution | -17.67 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1321226 108 + 22407834 U--------GCAAAAAUGCUAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGACGAGCG---AAAAUUAAUACGAAAUCGAAAAAUCAUUUAC .--------(((....)))....(((((((........(((.(((....))).)))...(((((((.....))))))).(((.((---..........))...))))))))))...... ( -25.60) >DroSec_CAF1 78675 107 + 1 U--------GCAAAAAUGCUAAAGAUUU-UUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGACGAGCG---AAAAUUAAUACGAAACCGAAAAAUCAUUUAC .--------(((....)))....(((((-(((......(((.(((....))).)))...(((((((.....))))))).......---.................))))))))...... ( -25.60) >DroEre_CAF1 91870 107 + 1 U--------GCAAGAAUGCUAGAGAUUU-UUUAAUGAAGCCAGGCACACGCCUGGCACACAAAUCUCCCUGGGAUUUGACGAGCG---AAAAUUAAUGCGAAAUCGAAAAAUCAUUUAC .--------(((....)))....(((((-((..((...(((((((....)))))))...(((((((.....)))))))....(((---........)))...))..)))))))...... ( -31.00) >DroWil_CAF1 112052 107 + 1 UUAGGGGGGAAAAAAAUUGGAAAUAUUUUUUUAAUGAAGU---------GACUG---CUAAAAUCUCACUGGGAUUUGACGCGCAGGCGAAAUUAAUAUGAAAUGGAAGAAUCAUUUAC .(((.((..(.....((((((((....))))))))....)---------..)).---)))((((((.....))))))..(((....)))...........((((((.....)))))).. ( -16.20) >DroYak_CAF1 81866 108 + 1 U--------GCAAAAAUGCCAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGACGAGCG---AAAAUUAAUACGAAAUCGAAAAAUCAUUUAC .--------(((....)))....(((((((........(((.(((....))).)))...(((((((.....))))))).(((.((---..........))...))))))))))...... ( -25.20) >DroAna_CAF1 104924 108 + 1 U--------GGAAAAAUGCAAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCCCGUGGGCAAAUCUCUCUGGGAUUUGACGAACG---AAAAUUAAUAUGAAAUCGAAAAAUCAUUUAC .--------....(((((.....((((((.(((((...(((((((....)))....))))((((((.....))))))........---...)))))...)))))).......))))).. ( -21.80) >consensus U________GCAAAAAUGCUAAAGAUUUUUUUAAUGAAGCCCGGCACACGCCUGGCACACAAAUCUCUCUGGGAUUUGACGAGCG___AAAAUUAAUACGAAAUCGAAAAAUCAUUUAC .............(((((.....((((((.(((((...(((.(((....))).)))...(((((((.....))))))).............)))))...)))))).......))))).. (-16.19 = -17.67 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:22 2006