Locus 4438

Sequence ID 2L_DroMel_CAF1
Location 12,761,908 – 12,762,000
Length 92
Max. P 0.688313
window6980

overview

Window 0

Location 12,761,908 – 12,762,000
Length 92
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 68.86
Mean single sequence MFE -22.86
Consensus MFE -9.38
Energy contribution -9.82
Covariance contribution 0.44
Combinations/Pair 1.32
Mean z-score -1.78
Structure conservation index 0.41
SVM decision value 0.32
SVM RNA-class probability 0.688313
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12761908 92 - 22407834
GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAGUGAUUCUUUAAGGUUUCAAUUAAAUAACACUUUAG-GGGUUUU------------CUGCAA
((.(((((.((((..((.....((((..(((((((((..(((((......)))))..).)))))))).)))).))..))-)).))))------------).)).. ( -22.60)
>DroSec_CAF1 39061 93 - 1
GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAAUGAUUCUUUGAGCUUUCAAUUAAGGAACACUUUAAGGGCCUUU------------CUGCAG
((.((((.((((((..((....(((..((((((((((.((((((......))))))..)))))))))).))).))..)))))).)))------------).)).. ( -24.80)
>DroSim_CAF1 39324 93 - 1
GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAAUGAUUCUUUAAGCUUUCAAUUAAGGAACACUUUAAUAGGUUUU------------CUGCAU
(.((..((((((..........(..(((((((..(((((......))))).)))))))..).(((((((....))))))))))))).------------.))).. ( -21.60)
>DroEre_CAF1 39885 103 - 1
GGCGAGAAGCCUUUUGGGAGUGGUUGGCUUAAUUGAGUUUUAAAUGCUCCUUUAAGCUUUCAAUUAAGGAGAGCUUUAAGCGUUUUUAGCCCUCAA--UUUGAAU
(((.(((((((((..(((((((...(((((....))))).....)))))))..((((((((.......)))))))).))).)))))).))).....--....... ( -28.40)
>DroAna_CAF1 37600 83 - 1
UUCUGUCGGCCUAUUGGGAAAA-CUGUCUUAAUUGGAUUUUAAAGGUUACUUUGAAUUCUGAAAUAAAACAA---------------------GGUUAAUUCAAU
....((..((((.((((((...-...))))))(..((.(((((((....))))))).))..).........)---------------------)))..))..... ( -16.90)
>consensus
GUCGAGAAGCCUUUUGGGAAAGGUUGGCUUAAUUGAGUUUUAAAUGAUUCUUUAAGCUUUCAAUUAAGGAACACUUUAA_GGGUUUU____________CUGCAU
.......(((((((....)))))))..(((((((((..((((((......))))))...)))))))))..................................... ( -9.38 =  -9.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:44 2006