| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,756,757 – 12,756,856 |
| Length | 99 |
| Max. P | 0.517396 |
| Location | 12,756,757 – 12,756,856 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.94 |
| Mean single sequence MFE | -33.35 |
| Consensus MFE | -19.33 |
| Energy contribution | -18.33 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12756757 99 + 22407834 UGGCAUGGGGAAUUGGGCGUAGUC-UGAGUGGGCUAAGAUCCGCUUGGCCCUGCUCCAGCAGCCAUAUGUUCCAUUAGCGUU-UUUUAAGCGCCUAUUGCC .((((((((((((..(((...((.-.((((((((((((.....)))))))).))))..)).)))....)))))....(((((-.....)))))))).)))) ( -41.00) >DroPse_CAF1 43996 84 + 1 CGG------GGAGAGGGCGU-----UGGGUGGG------UUCGCUUGGCUCUGGUCUGGCUGCCAUAUGUUCCAUUAGUUUUUUUUUAAGAGCCUAUUGCC .((------.((..((((((-----..((((..------..))))..))..((((......))))..........................)))).)).)) ( -20.70) >DroSim_CAF1 34134 100 + 1 UGGCAUGGGAGAUUGGGCGUGGUUGGGAGUGGGCUAAGAUCCGCUUGGCCCUGCUCCGGCAGCCAUAUGUUCCAUUAGCGUU-UUUUAAGCGCCUAUUGCC .(((((((((.((..(((...(((((.(((((((((((.....)))))))).)))))))).)))..)).)))))...(((((-.....)))))....)))) ( -43.70) >DroEre_CAF1 34722 99 + 1 UGGCAUGAGGGACUGGGCGUGGUC-UGAGUGGGCUAAGAUCCGCUUGGCCCUGCUCCGGCAGCCAUAUGUUCCAUUAGCGUU-UUUUAAGCGCCUAUUGCC .((((...(((((..(((...(((-.((((((((((((.....)))))))).)))).))).)))....)))))....(((((-.....)))))....)))) ( -44.30) >DroYak_CAF1 34121 86 + 1 U-------------GGGCGUGGUC-UGAGUGGGCUAAGAUCCGCUUGGCCCUGCAACAGCAGCCAUAUGUUCCAUUAGCGUU-UUUUAAGCGCCUAUUGCC (-------------((((((((((-((.((((((((((.....)))))))).))..)))..)))..(((((.....))))).-......)))))))..... ( -28.60) >DroPer_CAF1 43742 83 + 1 CGG------GGAGAGGGCGU-----UGGGUGGG------UUCGCUUGGCUCUGGUCUGGCUGCCAUAUGUUCCAUUAGCUUU-UUUUAAGAGCCUAUUGCC (..------(((((((((..-----((((..((------(..(((.(((....))).))).)))......))))...)))))-))))..)........... ( -21.80) >consensus UGG______GGAGUGGGCGUGGUC_UGAGUGGGCUAAGAUCCGCUUGGCCCUGCUCCGGCAGCCAUAUGUUCCAUUAGCGUU_UUUUAAGCGCCUAUUGCC ..............(((((((.....(((((((......)))))))(((.((.....))..))).)))))))((.(((((((......)))).))).)).. (-19.33 = -18.33 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:41 2006