| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,752,549 – 12,752,668 |
| Length | 119 |
| Max. P | 0.940604 |
| Location | 12,752,549 – 12,752,668 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 95.14 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -21.02 |
| Energy contribution | -21.27 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12752549 119 - 22407834 -UCCUCACUGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCGCAGGCAAGCAAUCCCUUUU -.......(((((((((....(((((....)))))(((...((((((..((.....))...))))))......(((((............)))))))))))))))))............. ( -23.50) >DroPse_CAF1 33922 119 - 1 -NNNNNNNNGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCGCAAGCAAGCAAUCCCUUUU -........((((((((....(((((....)))))(((...((((((..((.....))...))))))......(((((............)))))))))))))))).............. ( -23.10) >DroEre_CAF1 30973 119 - 1 -UCCUCACUGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCACAGGCAAGCAAUCCCUUUC -.......(((((((.((...(((((....)))))(((...((((((..((.....))...))))))......(((((............))))))))....)))))))))......... ( -18.70) >DroYak_CAF1 30063 119 - 1 -UCCUCACUGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCACAGGCAAGCAAUCCCUUUU -.......(((((((.((...(((((....)))))(((...((((((..((.....))...))))))......(((((............))))))))....)))))))))......... ( -18.70) >DroAna_CAF1 28802 120 - 1 UUUUUCUCUGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCGCAAGCAAGCAAUCCCUUUU ........(((((((((....(((((....)))))(((...((((((..((.....))...))))))......(((((............)))))))))))))))))............. ( -23.90) >DroPer_CAF1 33691 119 - 1 -UUCUGUCUGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCGCAAGCAAGCAAUCCCUUUU -...((..(((((((((....(((((....)))))(((...((((((..((.....))...))))))......(((((............)))))))))))))))))..))......... ( -27.20) >consensus _UCCUCACUGUUUGCGCUACGUUUUCAGUUGAAAGGCAAAAUUAACAAUAUGCAAAAUUCAUGUUAAAAUAUCGGAAAAAUAUAUAUUUCUUUCCUGCGCGCAAGCAAGCAAUCCCUUUU ........(((((((((....(((((....)))))(((...((((((..((.....))...))))))......(((((............)))))))))))))))))............. (-21.02 = -21.27 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:36 2006