| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,318,213 – 1,318,305 |
| Length | 92 |
| Max. P | 0.659963 |
| Location | 1,318,213 – 1,318,305 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -15.52 |
| Energy contribution | -15.41 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.659963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1318213 92 - 22407834 G---------AAUCGGAAGAUUCAUUAUCUAGCACAACAUACAUCCAAGUGUGUGCGUGUCCUCGAA--------GUUACAGGGGCA-UACGAAUCCUUGGAGGGAGUGC (---------((((....)))))........((((..(.....((((((..(...(((((((((...--------......)))).)-)))).)..)))))).)..)))) ( -32.20) >DroSec_CAF1 75697 100 - 1 GAAUCGG-GGAAUCGGAAGAUUCAUUAUCUAGCAAAACAUACAUCCAAGUGUGUGCGUGUCCUCGGA--------GUUCCAGGGGCA-UAGGAAUCCUUGAAUUGAGUCC ...((((-((((((....)))))....(((.((...((((((......))))))))((((((..((.--------...))..)))))-).)))...)))))......... ( -31.90) >DroSim_CAF1 79197 91 - 1 G----------AUCGGAAGAUUCAUUAUCUAGCACAACAUACAUCCAAGUGUGUGCGUGUCCUCGCA--------GUUCCAGGGGCA-UAGGAAUCCUUGAAUUGAGUCC .----------...(((.((((((...(((.(((((.(((........))))))))((((((..(..--------....)..)))))-).))).....))))))...))) ( -24.50) >DroEre_CAF1 89181 100 - 1 GAAUUCG-GGAAUCGGAAGAUUCAUUAUCUAGCACAACACACAUCCCAGUGUGUGCGUGUCCUCAGA--------GUUCCAGGGGCU-UAGAAAGCCAAGUAGGGUGUGC ((((((.-.(((((....)))))........((((.((((((......))))))..)))).....))--------))))....((((-.....))))............. ( -31.30) >DroYak_CAF1 78906 99 - 1 AGAUUCGGGGAGUCGGAAGAUUCAUUAUCUAGCACAACACACAUCCCAGUGUGUGCGUGUCCUUCGA--------GUUCCAGAGGCA-UAGAAAGUCAAGGAAGAAGU-- ((((.....(((((....)))))...)))).((((.((((((......))))))..)))).((((..--------.((((...(((.-......)))..)))))))).-- ( -28.70) >DroAna_CAF1 101938 101 - 1 A-------AGACUCGGAAGAUUCAUUAUCUGGCACAAUAUAGCUCAGAGUGUGUGUG-GCCCUUAUGGUAUCACGGUAUCAGAGCCACUAUAAAGUCG-GAAAGGGGUCA .-------.((.((....)).))....((((((........)).)))).......((-((((((.((((((....))))))...(((((....))).)-)..)))))))) ( -28.10) >consensus G_______GGAAUCGGAAGAUUCAUUAUCUAGCACAACAUACAUCCAAGUGUGUGCGUGUCCUCGGA________GUUCCAGGGGCA_UAGAAAGCCUUGAAAGGAGUCC .........(((((....)))))....(((((((((.(((........))))))))..(.((((.................)))))..)))).................. (-15.52 = -15.41 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:20 2006