| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,737,170 – 12,737,268 |
| Length | 98 |
| Max. P | 0.877529 |
| Location | 12,737,170 – 12,737,268 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 71.26 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -11.68 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12737170 98 + 22407834 ------------CGAUUUUCAAAUG----CAAU--AACCAAGUAGAAUGAUUAAAAUUCAGUGAAUUUU-UUUAGUUUGAGAGUAAGCCAACUCUGUAGUCUUUUGGGGAAUUGGCA ------------..((((((((((.----....--.........((((.......))))..((((....-))))))))))))))..(((((.(((.(((....))).))).))))). ( -21.00) >DroSec_CAF1 18843 102 + 1 --------UUAGCAAUUUUCAAAUU----UAAU--AUCCAAGUAGAAUGAUUAAAAUUCGCUAAAUUUU-UUUAGUUUGAGAGUAAGCCAACCCCGUGUUCUUUUGGGGAAUUGGCU --------......((((((((...----....--.........((((.......))))((((((....-)))))))))))))).(((((((((((........)))))..)))))) ( -25.70) >DroSim_CAF1 19175 102 + 1 --------UUAGCAAUUUUCAAAUU----UAAU--AUCCAAGUAGAAUGAUUAAAAUUCGCUGAAUUUU-UUUAGUUUGAGAGCAAGUUAAGCCCGUGUUCUUUUGGGGAAUUGGCU --------(((((..((((((((((----....--.....(((.((((.......))))))).......-...))))))))))...)))))(((...(((((.....))))).))). ( -19.41) >DroEre_CAF1 19445 116 + 1 GAAUACUCCUACCAAUUUCCAAAUUGGAUCAAUUGAAUCGAGUAAAAUGAUUUAGGUUCGGUGCAUUUG-UUAAGUUGUAGAGUGAGCCAACCACGUAUUCCUUUGUGGAAUCGGCA ...(((((....((((((((.....)))..)))))....)))))..........((((.(((.(((((.-..........))))).))))))).((.(((((.....)))))))... ( -27.20) >DroYak_CAF1 19338 104 + 1 AAAUACUCUUACCAAAUUGCAAAUG----UAAGAGCAU---------CGAUUUAAAUUCGGUGCAUUUUUUUUAGUUGUAGAGUAAGCCAACCCCGUACUCUCUUGGGGAAUUGGCU ...((((((...(((.((((....)----)))..((((---------(((.......)))))))...........))).))))))(((((((((((........)))))..)))))) ( -33.50) >consensus ________UUACCAAUUUUCAAAUU____UAAU__AACCAAGUAGAAUGAUUAAAAUUCGGUGAAUUUU_UUUAGUUUGAGAGUAAGCCAACCCCGUAUUCUUUUGGGGAAUUGGCU ...............................................(((.......)))..........................((((((((((........)))))..))))). (-11.68 = -10.80 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:29 2006