| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,728,568 – 12,728,673 |
| Length | 105 |
| Max. P | 0.588526 |
| Location | 12,728,568 – 12,728,673 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -29.58 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.67 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12728568 105 + 22407834 ----UCUUCGAAGUUGUUACAGGGUAUCUAUCCACCCUGAUCCUUUCAUUGGGCUGCGUUUAUAGCGCCCGCUACAUGCACAACGUGCUGCUCCAUGGCACUUUGCGUU ----........(((((..((((((........))))))...........((((.((.......))))))((.....)))))))(((((.......)))))........ ( -31.40) >DroPse_CAF1 16287 109 + 1 CCACUUCCCAAAGUUAUAACCGGAUAUUUCUCCACCCUGAUACUGUCGCUGGGCUGUGUGUACAGCGCCCGGUAUAUGCACAGUAUCCUAAUCCAUGCCACGUUGCGUU .....................(((......))).....((((((((((((((((..((....))..)))))))....).)))))))).......((((......)))). ( -25.20) >DroSim_CAF1 15408 106 + 1 ---CUCUUCGAAGUUGUUACAGGGUAUCUAUCCACCCUGAUCCUUUCAUUGGGCUGCGUUUAUAGCGCCCGCUACAUGCACAACGUGCUACUCCAUGGCACUUUGCGUU ---.........(((((..((((((........))))))...........((((.((.......))))))((.....)))))))((((((.....))))))........ ( -32.10) >DroEre_CAF1 15665 105 + 1 ----UCUUCGAAGUUGUUUCAGCGUACCUAUCCGACCUGAUCCUCUCAUUGGGUUGCGUUUUUAGCGCCCGGUACAUGCACAACGUGCUGCUCUAUGGCACUUUGCGUU ----....((((((.(((..((((((((.....((((..((......))..))))((((.....))))..)))))..((((...)))).)))....))))))))).... ( -30.40) >DroYak_CAF1 15512 105 + 1 ----UCUUCGAAGUUGUUACAGGGUAUCUAUCCACCCUGAUCCUUUCAUUGGGCUGCGUUUAUAGCGCCCGAUUCAUGCACAACGUGCUGCUCCAUGGCACUUUGCGUU ----........(((((..((((((........))))))........(((((((.((.......)))))))))......)))))(((((.......)))))........ ( -32.00) >DroPer_CAF1 16377 109 + 1 CCACUUCUCAAAGUUAUAACCGGAUAUUUCUCCACCCUGAUACUGUCGCUGGGCUGUGUGUACAGUGCCCAGUAUAUGCACAGUAUCCUAAUCCAUGCCACGUUGCGUU .....................(((......))).....((((((((((((((((..((....))..)))))))....).)))))))).......((((......)))). ( -26.40) >consensus ____UCUUCGAAGUUGUUACAGGGUAUCUAUCCACCCUGAUCCUUUCAUUGGGCUGCGUUUAUAGCGCCCGGUACAUGCACAACGUGCUACUCCAUGGCACUUUGCGUU ...................((((............))))........(((((((.((.......)))))))))....((.(((.((((((.....)))))).))).)). (-18.36 = -18.67 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:28 2006