| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,719,124 – 12,719,229 |
| Length | 105 |
| Max. P | 0.539541 |
| Location | 12,719,124 – 12,719,229 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.15 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -15.94 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12719124 105 - 22407834 AAAAAACUCGCUGCGAUUCAAACGAAUCGGUUGUGGGGGAUCGGAGUGAAUAGAAUCGAAUCGAAACAAAACGAGCCGUAGCGGUUGAGGUCGGAUCGCUAUUUG ....(((.(((((((((((....)))))((((((...(..((((..(((......)))..))))..)...)).)))))))))))))................... ( -28.40) >DroSec_CAF1 5710 102 - 1 GAAAAACUCGCUGCGAUUCAAAGGAAUCG--UAUGGGGUUUCGAAGUGAAUAGAAUCGAAUCGAAACAAAACGAGAAGUAGCGGUUGAGGUCGGAUCGCUGUUU- ......((((.((((((((....))))))--))....(((((((..(((......)))..)))))))....))))...((((((((.......))))))))...- ( -31.40) >DroSim_CAF1 5861 102 - 1 GAAAAACUCGCUGCGAUUCAAACGAAUCG--UAUGGGGUUUCGAAGUGAAUAGAAUCGAAUCGAAACAAAACGAGCCGUAGCGGUUGAGGUCGGAUCGCUGUUU- ......((((.((((((((....))))))--))))))(((((((..(((......)))..)))))))...........((((((((.......))))))))...- ( -30.90) >DroEre_CAF1 5995 90 - 1 GAAAAACUCGCUGCGAUUCAAACGAUUCG--GCUCUG--AUCGGAGUGAAUAGAAUCGA----------AACGAGCCGUAGCGGUUGGGAUCGGAUCGGUUUUU- .((((((.((.(.((((((...((((((.--(((((.--...))))).....)))))).----------....(((((...))))).)))))).).))))))))- ( -28.90) >DroYak_CAF1 6014 91 - 1 GAAAAACUCGCUGCGAUUCAAACGCAUCG--GCUCUG--AUCGGAGUGAAUAGAAUCGA---------AAACGAGCCGUAGCGGUUGGGAUCGGAUCGGUUUUU- .((((((.((.(.((((((...(((..((--(((((.--.((((..(.....)..))))---------..).))))))..)))....)))))).).))))))))- ( -30.20) >consensus GAAAAACUCGCUGCGAUUCAAACGAAUCG__UAUGGGG_AUCGGAGUGAAUAGAAUCGAAUCGAAACAAAACGAGCCGUAGCGGUUGAGGUCGGAUCGCUGUUU_ ....(((.(((((((((((....)))))............((((..(.....)..))))..................)))))))))................... (-15.94 = -16.10 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:27 2006