Locus 4424

Sequence ID 2L_DroMel_CAF1
Location 12,717,781 – 12,717,873
Length 92
Max. P 0.527205
window6962

overview

Window 2

Location 12,717,781 – 12,717,873
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 80.71
Mean single sequence MFE -38.38
Consensus MFE -23.77
Energy contribution -25.83
Covariance contribution 2.06
Combinations/Pair 1.25
Mean z-score -1.54
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.527205
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12717781 92 + 22407834
CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG----CCGCGACUCGACGUCGUCGUGGCUAGCCACCGCUUCCUCGAUGGCUUGGAGCACCU
........((((((((.((((((((((((((((...----.))).))))..))))))))).)).(((((.((......)).))))).))))))... ( -43.00)
>DroSec_CAF1 4370 92 + 1
CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG----ACGCGACCCGACGUCGUCGUAGCUAUCCACCGCUUCCUGGAUGGCCCGGAGCACCU
........(((((((((((((((.(((..((((...----.))))..))).))))))))).((((((((........))))))))..))))))... ( -45.60)
>DroSim_CAF1 4515 92 + 1
CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG----ACGCGACCCGACGUCGUCGUAGCUAUCCACCGCUUCCUCGAUGGCCCGGAGCACCU
........(((((((.(((.((((.((((((.((((----(.((....((((...))))..))..))))))))))).))).).))))))))))... ( -41.00)
>DroEre_CAF1 4643 92 + 1
CCAAUCAAUGUUCCGCGGGGGCGAUGGAGUGCGUGG----ACGCGACUCGACUUCGUCGUGGCCAUCCACCGCAUCCUCGAUGGCACGAAGCACCU
........(((.(((((((((((.((((.....(((----.((((((........)))))).))))))).)))..))))).))).)))........ ( -32.20)
>DroYak_CAF1 4637 92 + 1
CCAAUCAAUGUUUCGCGGCGGCGAUGGAGUGCGCGG----ACGCGACUCCACAUCGUCGUGCCCCUCCACCGCAUCCUCUAUGGCCCGAAGCACCU
........(((((((.((((((((((((((.(((..----..)))))))))..)))))((((.........))))........))))))))))... ( -35.70)
>DroAna_CAF1 4201 92 + 1
CCAAUCUAUGUUCCUCGGCGGCGGAGGAGUGCGUGGUCUGACGAGAUCCUG----CUCAUAGUCCUGCACGUAGUCGCCAAUGGAGCGCAGCACUU
.....((.((((((..((((((......(((((.((.(((..(((......----))).))).)))))))...))))))...)))))).))..... ( -32.80)
>consensus
CCAAUCAAUGUUCCGCGGCGGCGACGGAGUGCGUGG____ACGCGACCCGACGUCGUCGUAGCCAUCCACCGCUUCCUCGAUGGCCCGGAGCACCU
........(((((((..(((((((((..(.(((((......)))).).)..))))))))).((((((............)))))).)))))))... (-23.77 = -25.83 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:26 2006