| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,717,296 – 12,717,408 |
| Length | 112 |
| Max. P | 0.993400 |
| Location | 12,717,296 – 12,717,408 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 82.49 |
| Mean single sequence MFE | -32.82 |
| Consensus MFE | -23.30 |
| Energy contribution | -22.90 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.32 |
| Mean z-score | -3.03 |
| Structure conservation index | 0.71 |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.993400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12717296 112 + 22407834 AAAUCCUGUGGAUUUUGAUUUCUAUUGGGACGAUUGAAAUCCUGGGGGUUUUGAUUUCUAUUAGAUCGAUUGAAAUCCUGUGGAUUUUGAUUUCUAUUGGAACGAUUGAAAU------- ...(((((.((((((..((((((....))).)))..)))))))))))((((..(((((((.((((..(((..((((((...))))))..))))))).))))..)))..))))------- ( -34.80) >DroSec_CAF1 3837 119 + 1 AACUCCUGGGGGUUUUGAUUUCUAUUGGGACGAUUGAAAUUCUGUGGAUUUUGAUUUCUAUUGGGACGAUUAAAAUCCUGGGGGUUUUGAUUUCUAUUGGGACGAUUGAAAUCCUGGUG ..(.((..(((((((..((((((....(((.(((..(((((((..((((((((((((((....))).)))))))))))..)))))))..))))))....))).)))..))))))))).) ( -38.90) >DroSim_CAF1 3982 112 + 1 AAAUCCUGUGGAUUUUGAUUUCUAUUGGAACGAUUGAAAUCCUGUGGAUUUUGAUUUCUAUUGGGACGAUUGAAAUCCUGUGGAUUUUGAUUUCUAUUGGGACGAUUAAAUU------- .(((((...((((((..(((((((.((((..(((..((((((...))))))..))))))).))))..)))..))))))...)))))(((((((((....))).))))))...------- ( -32.80) >DroEre_CAF1 4044 112 + 1 AAUUCCUGUGGAUUGGCAUUACGAUUAUUGCGAUUGAACUCCUGGGGAUUUUGAUUUCUUAUAGGGCGAUUGAAAUCCUGUGGAUUUUGAUUUCUAUUUGAGCGCUUGAAUU------- (((((..((((((((......)))))...(.(((..((.(((..(((((((..(((.((.....)).)))..)))))))..))).))..))).)........)))..)))))------- ( -28.60) >DroYak_CAF1 4050 112 + 1 AACUCCUGGUGGUUUUGAUUUCUAAUAGGGCGACUGAAAUCCUGCGGAUUUUGAUUUCUAUUAGGGCGACUGAAAUCCUGCGGAUUUUGAUUUCUAUUAGAGCGAUUGAAUU------- ....((....)).((..((((((((((((..((..(((((((.(((((((((..((.((.....)).))..))))))).)))))))))..)))))))))))..)))..))..------- ( -29.00) >consensus AAAUCCUGUGGAUUUUGAUUUCUAUUGGGACGAUUGAAAUCCUGGGGAUUUUGAUUUCUAUUAGGACGAUUGAAAUCCUGUGGAUUUUGAUUUCUAUUGGAACGAUUGAAUU_______ ...................(((((.((((..(((((((((((...((((((((((((((....))).)))))))))))...))))))))))))))).)))))................. (-23.30 = -22.90 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:25 2006