Locus 4421

Sequence ID 2L_DroMel_CAF1
Location 12,706,976 – 12,707,096
Length 120
Max. P 0.561047
window6959

overview

Window 9

Location 12,706,976 – 12,707,096
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.39
Mean single sequence MFE -32.02
Consensus MFE -22.64
Energy contribution -25.58
Covariance contribution 2.94
Combinations/Pair 1.06
Mean z-score -1.50
Structure conservation index 0.71
SVM decision value 0.05
SVM RNA-class probability 0.561047
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12706976 120 - 22407834
UCACAGAUCGCGACUUCUUCACGCCACGAAAGAUUCGUAGACCAAAGGAUCUUCCGCCAGUGGAGAACAGUCCGGAUAACUCAGCCGAUGACUCAUUUCACACCGCUAAAAGUCUGAGCA
...(((((((.(((((((((((....((.(((((((..........))))))).))...)))))))..))))))........(((.(.(((......)))..).)))....))))).... ( -29.40)
>DroSec_CAF1 2322 118 - 1
UAACAGAUC-CGAGUUCUUCACGACACGGAAGAUUCGUAGACCAAAGGAUCUUCCGCCAGCGGAGAACAGUCCGGAUAACUCAGCCGAUGACUCAUUUCACAC-GCUGAAAGUCUGAGCA
...((((((-((.(((((((.(....((((((((((..........))))))))))...).)))))))....))))....(((((...(((......)))...-)))))...)))).... ( -38.40)
>DroEre_CAF1 2386 120 - 1
UCACAGAUCGCAAAUUCUUCGCGCCACGGAAGAUUCGCAGACCAAAGGAGCUUCCGCCAGCGGAGUACAUUCCUAAUAACUCAACAGAAGACUCAUUCCACACCGCUGAAAGUCUGAGCA
...((((((((.........)))...((((((.(((..........))).)))))).(((((((((............))))....(((......))).....)))))...))))).... ( -25.90)
>DroYak_CAF1 2541 120 - 1
UCACAGAUCGCGAGUUCUUCAAACCACGGAAGAUUUGCAGAUUAAAGGAUCUUCCGCUAGCGGAAUACAGUCCUAACAACUCAGCAGAUGACUCGUUCCACAUCGCUGAAAGUCUGAGCA
...(((((.((((((.((((........)))))))))).......(((((.(((((....)))))....)))))......(((((.((((..........)))))))))..))))).... ( -34.40)
>consensus
UCACAGAUCGCGAGUUCUUCACGCCACGGAAGAUUCGCAGACCAAAGGAUCUUCCGCCAGCGGAGAACAGUCCGAAUAACUCAGCAGAUGACUCAUUCCACACCGCUGAAAGUCUGAGCA
...(((((.....(((((((((....((((((((((..........))))))))))...)))))))))............(((((...((........))....)))))..))))).... (-22.64 = -25.58 +   2.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:23 2006