| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,316,464 – 1,316,558 |
| Length | 94 |
| Max. P | 0.707490 |
| Location | 1,316,464 – 1,316,558 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 82.48 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -21.44 |
| Energy contribution | -21.83 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1316464 94 + 22407834 CCGAAAUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGAGAAAAUAUUGUGUGUCAUUAUCGACACGGCACAGUGGGGCAAAUAAGCG------AUA-G ............((.(((((((((((..(((....)))..)))...(((((((((((......)))...))))))))))))))))..)).------...-. ( -28.80) >DroSec_CAF1 73990 85 + 1 CCGAACUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAA---------------A-G ((..((.(((((((.....)))))...)).))..((((((((......((((((.(......).))))))))))))))))...---------------.-. ( -27.20) >DroSim_CAF1 75270 85 + 1 CCGAACUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAA---------------A-G ((..((.(((((((.....)))))...)).))..((((((((......((((((.(......).))))))))))))))))...---------------.-. ( -27.20) >DroEre_CAF1 87470 101 + 1 CCGGACUCCGUGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGGCACGGCACAGUGGGUCAAAUUGGGAAACUAAAUUUC ...(((.(((.(((.....)))....))).....((((((((......((((((.(......).)))))))))))))))))...((((....))))..... ( -30.80) >DroYak_CAF1 77137 100 + 1 CCGGACUCCGGGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAAGUGGGCAAACUGAAUA-G ((((...))))..((.(((((((.((((.(....((((((((......((((((.(......).))))))))))))))).)))).))))))).))....-. ( -35.60) >DroAna_CAF1 99933 85 + 1 CAGGACUCUAUGGCAAUUUGCCUUCUUGGUGUAACCGCUGUGAAAAUAUUGUGUGGCAUUAUCGACAUUGCACAGUGACACAAA----------------A (((((......(((.....))).)))))((((...(((((((........((((.(......).))))..)))))))))))...----------------. ( -21.00) >consensus CCGAACUCCGAGGCAAUUUGCCUUCUUGGUGUAACCACUGUGAAAAUAUUGUGUGGCAUUAUCGACACGGCACAGUGGGGCAAA______________A_G ....((.(((((((.....))))...))).))..((((((((......((((((.(......).))))))))))))))....................... (-21.44 = -21.83 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:19 2006