Locus 4418

Sequence ID 2L_DroMel_CAF1
Location 12,704,833 – 12,704,928
Length 95
Max. P 0.726700
window6956

overview

Window 6

Location 12,704,833 – 12,704,928
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 79.65
Mean single sequence MFE -38.92
Consensus MFE -24.04
Energy contribution -26.60
Covariance contribution 2.56
Combinations/Pair 1.16
Mean z-score -1.75
Structure conservation index 0.62
SVM decision value 0.41
SVM RNA-class probability 0.726700
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12704833 95 + 22407834
GUGACGGUGGGUGGCAUGCUGCCGGUAGAAGCCAACCAAUCGCCUGAAACCGCUCCGCUUUCGAUGGCGGAGACGGUGUCCAACACGGACUUCUA
((((...(((.((((...(((....)))..)))).))).))))..((((((((((((((......))))))).))))((((.....))))))).. ( -39.40)
>DroSec_CAF1 45 95 + 1
AUGACGGUGGGGGGCAUGCUCCCGGGCGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGAUGGCGGAGGCGGUGUCCAACACGGACUUCUA
....(.((((((((....)))))((((((..........))))))((((((((((((((......)))))).))))))))...))).)....... ( -46.80)
>DroSim_CAF1 49 95 + 1
AUGACGGUGGGGGGCAUGCUCCCGGGCGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGAUGGCGGCGGCAGUGUCCAACACGGACUUCUA
.....(((((((((....)))))((((((..........))))))..))))((((((((......))))).)))((.((((.....))))..)). ( -40.40)
>DroEre_CAF1 43 95 + 1
AUGACUGUGGGGGUCAUGCUCCCGGGAGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGGUGGCGGAGGCGGUGUCCAACAAGGACUUCUA
.....(.((((((.....)))))).)(((((((...(....)...((((((((((((((......)))))).))))))))......)).))))). ( -40.00)
>DroYak_CAF1 45 95 + 1
AUGACGGUGGGGGGCAUGCUCCCGGGUGAAGCCAACCAAUCGCCUGACACCGCUCCCCUUUCGGUGGCGCAGGCGGUAUCCAACACGGAUUUCUA
.....(((.(((((....))))).((.....)).))).((((((((.(.(((((........))))).)))))))))((((.....))))..... ( -36.70)
>DroPer_CAF1 39 86 + 1
ACGCAGGCAGCCAGCAUGCCAGUAGCUGGACCCA-------GCCUGGCCCCGCCC--GUCACACUGGCGGCGCCCUUGACGAAUACAGACUUCUA
.(((((((.(((.....(((((..((((....))-------)))))))...(((.--(.....).)))))))))..)).)).............. ( -30.20)
>consensus
AUGACGGUGGGGGGCAUGCUCCCGGGAGAAGCCAACCAAUCGCCUGACACCGCUCCGCUUUCGAUGGCGGAGGCGGUGUCCAACACGGACUUCUA
.....(((((((((....)))))((......)).......)))).((((((((((((((......))))))).)))))))............... (-24.04 = -26.60 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006