Locus 4417

Sequence ID 2L_DroMel_CAF1
Location 12,704,636 – 12,704,742
Length 106
Max. P 0.650048
window6955

overview

Window 5

Location 12,704,636 – 12,704,742
Length 106
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 87.22
Mean single sequence MFE -34.37
Consensus MFE -26.22
Energy contribution -28.06
Covariance contribution 1.84
Combinations/Pair 1.10
Mean z-score -1.65
Structure conservation index 0.76
SVM decision value 0.24
SVM RNA-class probability 0.650048
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12704636 106 - 22407834
AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGUCAGUGAUGUCAGCUAGGCUGACUGCAUUUGC--
((((((...((((..........)))).))))))((((((((.((((((((........))))........(((.((....)).)))....)))).)))))..)))-- ( -33.80)
>DroSec_CAF1 5426 108 - 1
AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGCCAGUGAUGGCAGCUCGGCUGACUGCAUUUGCUA
((((((...((((..........)))).))))))((((((((.((((((((........))))........((((((....))))))....)))).)))))..))).. ( -41.00)
>DroSim_CAF1 5458 108 - 1
AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGCCAGUGAUGGCAGCUCGGCUGACUGCAUUUGCUA
((((((...((((..........)))).))))))((((((((.((((((((........))))........((((((....))))))....)))).)))))..))).. ( -41.00)
>DroEre_CAF1 6329 108 - 1
AGUCACAAACCAACAAUGAAUCUCAGGAGUGGCUGCAUGCGGACAGCCGGAAAAUACCGCCCUUACCAACACUGUCAGUGAUGGCAGCUCGGCUGACUGCGUUUGCGG
((((((...((..............)).))))))((((((((.(((((((......)).............((((((....))))))...))))).)))))..))).. ( -34.24)
>DroYak_CAF1 5657 95 - 1
AGUCACAAGCCAACAACGAAUCUCAG-AGUGGCUGCAUGCGGACAGCGGGAAAAUACCGGCCU------------CAGUGAUGCCAGCUAGACUGACUGCAUUUACUA
.......(((((....(........)-..)))))..((((((.((((((.......))(((.(------------(...)).))).....).))).))))))...... ( -21.80)
>consensus
AGUCACAAGCCAACAAUGAAUCUUUGGAGUGGCUGCAUGCGGACAGCGGGUAAAUACCGACCCUACCAACACUGCCAGUGAUGGCAGCUCGGCUGACUGCAUUUGCUA
((((((...((..............)).))))))((((((((.((((((((........))))........((((((....))))))....)))).)))))..))).. (-26.22 = -28.06 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006