Locus 4416

Sequence ID 2L_DroMel_CAF1
Location 12,698,483 – 12,698,575
Length 92
Max. P 0.697764
window6954

overview

Window 4

Location 12,698,483 – 12,698,575
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 80.10
Mean single sequence MFE -30.83
Consensus MFE -21.54
Energy contribution -20.77
Covariance contribution -0.77
Combinations/Pair 1.25
Mean z-score -1.43
Structure conservation index 0.70
SVM decision value 0.34
SVM RNA-class probability 0.697764
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12698483 92 + 22407834
AUCAUCCGCAUUCCACUCCUUCGCAAGUCGAUUGCGGUUUCGAGGCUGUCGAACAGCCGGCGGCAAUUAUAAAUGUGGAAGCGGCCAAGGCG
......(((.((((((....((((((.....)))))).......(((((((......)))))))..........)))))))))((....)). ( -32.80)
>DroPse_CAF1 3150 89 + 1
CCAAUCCCAAUGCGCGUCCUCCCAAUAUUGAUUGUGGCCUCGAGGCUGUCGAGCAGCCGGCGGCCAUCAUUAAUGUGGAA---AUCAAGGAA
................((((.(((.(((((((.((((((.(..(((((.....))))).).)))))).))))))))))..---....)))). ( -30.80)
>DroSec_CAF1 2211 92 + 1
AUCAUCCACAUUCCACUCCUUCUCAAGUCGAUUGCGGCUUCGAGGCUGUCGAACAGCCGGCGGCAAUUAUAAAUGUGGAGGCGGCCAAGGCA
....((((((((.........(((((((((....)))))).)))(((((((......))))))).......))))))))....((....)). ( -32.80)
>DroEre_CAF1 2186 89 + 1
AUCAUCCCCAUUCCGCUCCUUCGCAAGUCGAUUGCGGCUUCGAGGCUGUGGAGCAGCCGGCGGCAAUUAUAAACGUGGAG---CCCAAGGCG
....(((.(.((((((..(((((.((((((....)))))))))))..))))))..(((...)))..........).)))(---((...))). ( -30.40)
>DroYak_CAF1 2219 89 + 1
AUCAUCCCCAUUCCACUCCUUCGCAAGUCGAUUGCGGUUUUGAGGCUGUGGAGCAGCCGGCGGCAAUUAUAAAUGUGGAG---CCCAAGGCG
...........(((((.....(....)..((((((.(((....(((((.....)))))))).))))))......)))))(---((...))). ( -27.40)
>DroPer_CAF1 3151 89 + 1
CCAAUCCCAAUGCGCGUCCUCCCAAUAUUGAUUGUGGCCUCGAGGCUGUCGAGCAGCCGGCGGCCAUCAUUAAUGUGGAA---AUCAAGGAA
................((((.(((.(((((((.((((((.(..(((((.....))))).).)))))).))))))))))..---....)))). ( -30.80)
>consensus
AUCAUCCCCAUUCCACUCCUUCGCAAGUCGAUUGCGGCUUCGAGGCUGUCGAGCAGCCGGCGGCAAUUAUAAAUGUGGAA___ACCAAGGCA
.................(((.........((((((.(((....(((((.....)))))))).)))))).......(((......)))))).. (-21.54 = -20.77 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:18 2006