Locus 4415

Sequence ID 2L_DroMel_CAF1
Location 12,697,175 – 12,697,271
Length 96
Max. P 0.734476
window6953

overview

Window 3

Location 12,697,175 – 12,697,271
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 84.95
Mean single sequence MFE -30.98
Consensus MFE -24.12
Energy contribution -23.88
Covariance contribution -0.24
Combinations/Pair 1.36
Mean z-score -2.29
Structure conservation index 0.78
SVM decision value 0.43
SVM RNA-class probability 0.734476
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12697175 96 - 22407834
AUGACCAUCACCAACUGGUUUAAUUGGUCCGUAAAGGAUUUAAGCAAUGAGUCCCAUGCGA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU
..........((((((((((.((((((((((((..(((((((.....)))))))..)))).---))))....(((....))))))).)))))))))).. ( -33.90)
>DroSec_CAF1 902 96 - 1
AUGACCAUCGCCAACUGGUUUAAUUGGUCCGUUACGGAUUUAAGCAAUGAGUCCCAUGCGA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU
..........((((((((((.(((((((((((...(((((((.....)))))))...))).---))))....(((....))))))).)))))))))).. ( -32.50)
>DroSim_CAF1 896 96 - 1
AUGACCAUCACCAACUGGUUUAAUUGGUCCGUUAAGGAUUUAAGCAAUGAGUCCCAUGCGA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU
..........((((((((((.(((((((((((...(((((((.....)))))))...))).---))))....(((....))))))).)))))))))).. ( -32.80)
>DroEre_CAF1 877 96 - 1
AUGACCAUCGCCAACUGGUAUAAUUGGUCCGUUGCCGAUUCUAGCAAUGAGUCCUAUGCCA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU
..........(((((((((..(((((((.....))))))).......((((((((......---(((....)))......))))))))))))))))).. ( -30.30)
>DroYak_CAF1 921 96 - 1
AUGACCAUCACCAACUGGUAUAAUUGGUCCGUUAAGGAUUUUAGCAAUGAGUCCCAUGCCA---GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU
..........(((((((((......(((((.....))))).......((((((((......---(((....)))......))))))))))))))))).. ( -31.80)
>DroAna_CAF1 1283 99 - 1
AUGACCAUCACCAACUGGUCCAAGUGGAAUGGUGUUGCCUCCAACAACGAUAUUCAGAAGAUCCGGCCCAAGGUGAUUCAGGGUUUCGAUCGUUUGGAU
..(((((........)))))....((((..((.....))))))........(((((((.((((.(((((...........)))))..)))).))))))) ( -24.60)
>consensus
AUGACCAUCACCAACUGGUUUAAUUGGUCCGUUAAGGAUUUAAGCAAUGAGUCCCAUGCGA___GACCCAAGUUGAUUCCGGGAUUCGACCAGUUGGAU
..........(((((((((......(((((.....))))).......((((((((.........................))))))))))))))))).. (-24.12 = -23.88 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006