Locus 4412

Sequence ID 2L_DroMel_CAF1
Location 12,694,646 – 12,694,738
Length 92
Max. P 0.562458
window6949

overview

Window 9

Location 12,694,646 – 12,694,738
Length 92
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.35
Mean single sequence MFE -23.75
Consensus MFE -13.81
Energy contribution -14.20
Covariance contribution 0.39
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.58
SVM decision value 0.06
SVM RNA-class probability 0.562458
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12694646 92 - 22407834
CAAGGACAUUUCCAUCGACAUUACGCUGAAUGUCCAGGC------GGGCACCCCACCGACCACCUCGGACACGGC-CACCUCGUCCACAUACAACAAUG
...((((.........((((((......))))))..(((------(((...))).((((.....)))).....))-).....))))............. ( -25.10)
>DroPse_CAF1 344 89 - 1
UAAGGACAUAUCCAUAGAUAUCACUCUGAAUGUGCAGGCGCA---GGGAAG---UCCCACGACAACGGA---GGC-CACCUCGUCCACAUACAACAAUG
...(((((((((....)))))..(((((..((((....))))---(((...---.))).......))))---)..-......))))............. ( -23.60)
>DroSim_CAF1 351 93 - 1
CAAGGACAUUUCCAUCGACAUCACGCUGAAUGUCCAGGC------GGGCACCCCACCCACCACCUCGGACACGGGCCACCUCGUCCACAUACAACAAUG
...(((((((..((.((......)).))))))))).((.------(((.......))).)).....((((..((....))..))))............. ( -25.40)
>DroYak_CAF1 361 92 - 1
CAAGGACAUUUCCAUCGACAUCACUCUGAAUGUUCAGGC------GGGUACCCCACCCACCACAUCGGACACGGC-CACCACGUCCACAUAUAACAAUG
...((((.........((((((.....).)))))..(((------((((.....)))).((.....)).....))-).....))))............. ( -20.60)
>DroAna_CAF1 330 98 - 1
UAAGGACAUAUCCAUCGACAUCACGCUGAAUGUGCAGGCUCAGGGCGGAACUCCUCCCACAACAUCGGAUGGAGG-CACUUCAUCCAGUUACAACAACG
....(.(((((.((.((......)).)).)))))).((((..(((.((....)).)))........((((((((.-..))))))))))))......... ( -24.20)
>DroPer_CAF1 344 89 - 1
UAAGGACAUAUCCAUAGAUAUCACUCUGAAUGUGCAGGCGCA---GGGAAG---UCCCACGACAACGGA---GGC-CACCUCGUCCACAUACAACAAUG
...(((((((((....)))))..(((((..((((....))))---(((...---.))).......))))---)..-......))))............. ( -23.60)
>consensus
CAAGGACAUAUCCAUCGACAUCACGCUGAAUGUGCAGGC______GGGAACCCCACCCACCACAUCGGACACGGC_CACCUCGUCCACAUACAACAAUG
...((((...(((............(((......)))........((((.....))))........)))...((....))..))))............. (-13.81 = -14.20 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:13 2006