Locus 4410

Sequence ID 2L_DroMel_CAF1
Location 12,692,514 – 12,692,604
Length 90
Max. P 0.721506
window6947

overview

Window 7

Location 12,692,514 – 12,692,604
Length 90
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 74.93
Mean single sequence MFE -26.60
Consensus MFE -9.22
Energy contribution -8.72
Covariance contribution -0.50
Combinations/Pair 1.17
Mean z-score -2.28
Structure conservation index 0.35
SVM decision value 0.40
SVM RNA-class probability 0.721506
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12692514 90 - 22407834
GCAUCAGAAUUUCCGG-CCAAAUGGCCUAUUGAA--AAAGCAGUUG-GAUGCCGGCUG--UCUGGAAACUUCUUGGGCGGAAGAAGAAGAAG-AGCG
((.......(((((((-((....)))).......--...(((((((-(...)))))))--)..)))))((((((...(....)...))))))-.)). ( -31.60)
>DroPse_CAF1 89956 85 - 1
GGUA---AAUUUCCAUGGAUAAUGCC-U-UUGAAAAAACGCAGUUG-GACGCCGGCUGCGUCUGGAAAUUUCUUUG-----AGAAGAAGAAG-AGCA
.((.---..((((((.((......))-.-........(((((((((-(...)))))))))).))))))(((((((.-----....)))))))-.)). ( -24.20)
>DroSec_CAF1 1880 90 - 1
GCAUCAGGAUUUCCGG-CCAAAUGGCCUAUUGAA--AAAGCAGUUG-GAUGCCGGCUG--UCUGGAAACUUCUUAGGCGGAAGAAGAAGAAG-AGCG
((.......(((((((-((....)))).......--...(((((((-(...)))))))--)..)))))((((((...(....)...))))))-.)). ( -32.70)
>DroYak_CAF1 1926 91 - 1
GCACCAGAGUUUCUGG-CCAAAUGGUCUAUUGAA--AAAGCAGUUG-GAUGCCGGCUG--UCUGGAAACUUCUUGGGCGGAAGAAGAAGAAGAAGCG
((.(((((.((((.((-((....))))....)))--)...((((((-(...)))))))--)))))...((((((...(....)...))))))..)). ( -31.10)
>DroAna_CAF1 1769 85 - 1
GCACCA---UUUGCAUUCAAAAUGGCUUAAGAAA--AUAUCAGUUGCGGUGCCGGCUG--UCUGGAAACUUCUUACGCG----AAGAAGAAG-AGAG
((.(((---(((.......))))))..((((((.--...((((..(((((....))))--)))))....)))))).)).----.........-.... ( -16.90)
>DroPer_CAF1 90240 85 - 1
GGUA---AAUUUUCAUGGAUAAUGCC-U-UUGAAAAAACGCAGUUG-GACGCCGGCUGCGUCUGGAAAUUUCUUUG-----AGAAGAAGAAG-AGCA
....---..((((((.((......))-.-.)))))).(((((((((-(...)))))))))).......(((((((.-----....)))))))-.... ( -23.10)
>consensus
GCAACA_AAUUUCCAG_CAAAAUGGCCUAUUGAA__AAAGCAGUUG_GAUGCCGGCUG__UCUGGAAACUUCUUAGGCG__AGAAGAAGAAG_AGCG
.......................................((..........((((......))))...((((((.........)))))).....)). ( -9.22 =  -8.72 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:11 2006