| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,684,838 – 12,684,928 |
| Length | 90 |
| Max. P | 0.827806 |
| Location | 12,684,838 – 12,684,928 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.39 |
| Mean single sequence MFE | -40.55 |
| Consensus MFE | -25.54 |
| Energy contribution | -26.04 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827806 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12684838 90 - 22407834 ------------AGGAUCCUCCCU---UUGCUGCUGCUUCAUCUGUUGCAGGGCCUGAAACUGCGCUAAGGCUUGCAGUGAGUUCUGCAGCAGGAACUGCGUGGC ------------(((......)))---..((..(.((....(((((((((((((.....(((((((....))..)))))..)))))))))))))....)))..)) ( -34.90) >DroVir_CAF1 168396 102 - 1 --GCUGGCCGUGGG-CAGCUGCUGAUCCCGCUGCUGCUUGAGCUGCUGCAGCGCCUGGAACUGGGCCAGCGCUUGCAGCGAGUUCUGCAGCAGAAACUGUGUCGC --((((.(....).-)))).((.((..(..(((((((..(((((((((((((((.(((.......))))))).)))))).))))).))))))).....)..)))) ( -50.10) >DroPse_CAF1 78924 99 - 1 GUGGUGGAU---GGAGUCCUCGCG---CUGCUGCUGCUUGAGCUGCUGCAGGGCCUGGAACUGUGCCAGGGCCUGCAGGGAGUUCUGCAGCAGGAACUGGGAGGC .........---.....((((.((---.(.(((((((..(((((.(((((((.(((((.......))))).)))))).).))))).))))))).)..)).)))). ( -50.90) >DroEre_CAF1 67351 90 - 1 ------------AGGAUCCUCCCU---CUGCUGCUGCUUCAUCUGCUGCAGGGCCUGAAACUGCGCCAAGGCUUGCAGGGAGUUCUGCAGCAGGAACUGCGUGGC ------------(((......)))---..((..(.((....(((((((((((((((....((((((....))..)))))).)))))))))))))....)))..)) ( -37.00) >DroYak_CAF1 68182 90 - 1 ------------AGGAUCCUCCCU---UUGCUGCUGCUUCAUCUGCUGCAGGGCCUGAAACUGCGCCAGGGCCUGCAGGGAGUUCUGCAGCAGGAACUGCGUGAC ------------(((......)))---((.(((((((....(((.(((((((.((((.........)))).)))))))))).....))))))).))......... ( -38.60) >DroAna_CAF1 57034 90 - 1 ------------GGACUCCUCGCG---UUGCUGCUGUUUCAUCUGCUGGAGAGCCUGAAACUGGGCCAGGGCCUGCAGCGAGUUCUGCAACAGGAACUGGGUGGC ------------...(..(((...---.((((((.((((((...(((....))).)))))).((((....))))))))))((((((......)))))))))..). ( -31.80) >consensus ____________AGGAUCCUCCCG___CUGCUGCUGCUUCAUCUGCUGCAGGGCCUGAAACUGCGCCAGGGCCUGCAGGGAGUUCUGCAGCAGGAACUGCGUGGC ..............................(((((((........(((((((.((((.........)))).)))))))........)))))))............ (-25.54 = -26.04 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:08 2006