Locus 4406

Sequence ID 2L_DroMel_CAF1
Location 12,675,333 – 12,675,444
Length 111
Max. P 0.979765
window6943

overview

Window 3

Location 12,675,333 – 12,675,444
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -30.33
Consensus MFE -15.01
Energy contribution -17.15
Covariance contribution 2.14
Combinations/Pair 1.28
Mean z-score -2.88
Structure conservation index 0.49
SVM decision value 1.85
SVM RNA-class probability 0.979765
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12675333 111 - 22407834
UGCUCUGCA-GUUUUCU-UCGGGUUUCUGCC-------AAAAAAAAAAAAACGGACAGAAAAAACGGACAAAAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGCGAAGAAAAUUCAUUA
.....((.(-(((((((-(((.((((.((((-------.............(((..((((((............)))))))))((.....))))))...)))).)))))))))))))... ( -25.40)
>DroSec_CAF1 56007 118 - 1
UGCUCUGCA-GUUUUCU-UCGGUUUUCUGUCUCAAAAAAAAAAAAAAAAAACCGGCAGGAAAAACGGCGCGCAAUUUUCUUCGACAUUGUGCGGCGAAAAAAUGCGAAGAAAAUUCAUUA
.....((.(-(((((((-(((.(((((((((......................)))))))))..((.((((((((.((....)).)))))))).))........)))))))))))))... ( -34.05)
>DroSim_CAF1 57901 116 - 1
UGCUCUGCA-GUUUUCU-UCGGUUUUCUGUCUCAAAAACAA--AAAAAAAACGGGCAGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGCGAAGAAAAUUCAUUA
.....((.(-(((((((-(((.((((((((((.........--.........))))))))))..((.((((((((...(....).)))))))).))........)))))))))))))... ( -37.27)
>DroEre_CAF1 57801 108 - 1
UGCUCUGCACGGUUUCU-UCGGUUUUCUGUCCCAA-----------AAAAACGCACUGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGUGAAGAAAAUUCAUUA
...(((.((((((((.(-(((((............-----------........)))))).))))(.((((((((...(....).)))))))).).......)))).))).......... ( -25.05)
>DroYak_CAF1 58579 107 - 1
UGCUCUGCA-GUUUUCU-UCGGUUUUCAGUCCCAA-----------AAAAACGGACUGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGUGGCGAAAAAAUGUGAAGAAAAUGCAUCA
.....((((-.((((((-(((.((((((((((...-----------......))))))))))..((.((((((((...(....).)))))))).))........)))))))))))))... ( -38.90)
>DroAna_CAF1 48385 96 - 1
UUUUCUUCUUGUUUUUUGCCUGUUUUCUAUCCCAA-----------A-------------AAAACGGUGCGCAAUUUUCUUCGCCAUUGUGACUGGAAAAAAUCGGAAGAAAAUAUAUGA
(((((((((.((((((((((((((((.........-----------.-------------))))))).))..........((((....))))....))))))).)))))))))....... ( -21.30)
>consensus
UGCUCUGCA_GUUUUCU_UCGGUUUUCUGUCCCAA___________AAAAACGGACAGAAAAAACGGCGCGCAAUUUUCUUCGGCAUUGUGCGGCGAAAAAAUGCGAAGAAAAUUCAUUA
..........(((((((.(((.(((((((((......................)))))))))..((.((((((((..........)))))))).))........))))))))))...... (-15.01 = -17.15 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:07 2006