| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,674,397 – 12,674,492 |
| Length | 95 |
| Max. P | 0.712428 |
| Location | 12,674,397 – 12,674,492 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.68 |
| Mean single sequence MFE | -30.24 |
| Consensus MFE | -21.66 |
| Energy contribution | -21.28 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12674397 95 + 22407834 AAGGGAAAAUCCAAAGUGAAAAGCUCUGA----CG-------CAAAACUGGUGUCACUACCAACUGUGACCCGGUACCCUGAGCAGCUUAUGGCCAAUUGAGCCCC ..(((.................((((...----..-------....(((((.(((((........)))))))))).....)))).(((((........)))))))) ( -26.64) >DroPse_CAF1 66037 94 + 1 AAAGUAAAAUCCAAAGGG-AAAGCUCUAA----CA-------CGGCGCUGGUGUCACUACCAACUGUGACCCGGUGCUCUGAGCAGCUUAUGGCCAAUUGAGCCCU .((((....(((....))-)..((((...----..-------.((((((((.(((((........)))))))))))))..)))).))))..((((....).))).. ( -33.70) >DroEre_CAF1 56750 99 + 1 CAGGGAAAAUCCAAAGUGAAAAGCUCUGAAAACUG-------UGAAACUGGUGUCACUACCAACUGUGACCCGGUACCCUGAGCAGCUUAUGGCCAAUUGAGCCCC (((((......((.(((.....))).)).......-------....(((((.(((((........)))))))))).)))))....(((((........)))))... ( -29.10) >DroYak_CAF1 57485 106 + 1 AUGGGAAAAUCCAAAGUGAAAAGCUUGGAAAACUGCUGCCCUCGAAACUGGUGUCACUACCAACUGCGACCCGGUACCCUGAGCAGCUUAUGGCCAAUUGAGCCCC ..(((....(((((.((.....))))))).....(((((.(..(..(((((.(((.(........).))))))))..)..).)))))...............))). ( -28.80) >DroAna_CAF1 47594 92 + 1 GAGGGAGACGCGACA--GGAAAGCUCUGA----CU-------C-AAACUGGUGUCACUACCAACUGUGACCCGGUACUCUGAGCAGCUUAUGGCCAAUUGAGCUCC ...((((...(((..--((.(((((..(.----((-------(-(.(((((.(((((........))))))))))....))))))))))....))..)))..)))) ( -29.50) >DroPer_CAF1 65698 94 + 1 AAAGUAAAAUCCAAAGGG-AAAGCUCUAA----CA-------CGGCGCUGGUGUCACUACCAACUGUGACCCGGUGCUCUGAGCAGCUUAUGGCCAAUUGAGCCCU .((((....(((....))-)..((((...----..-------.((((((((.(((((........)))))))))))))..)))).))))..((((....).))).. ( -33.70) >consensus AAGGGAAAAUCCAAAGUGAAAAGCUCUGA____CG_______CGAAACUGGUGUCACUACCAACUGUGACCCGGUACCCUGAGCAGCUUAUGGCCAAUUGAGCCCC ..(((.................((((....................(((((.(((((........)))))))))).....)))).(((((........)))))))) (-21.66 = -21.28 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:03 2006