Locus 4403

Sequence ID 2L_DroMel_CAF1
Location 12,674,262 – 12,674,354
Length 92
Max. P 0.664870
window6938

overview

Window 8

Location 12,674,262 – 12,674,354
Length 92
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 76.86
Mean single sequence MFE -20.39
Consensus MFE -12.29
Energy contribution -12.27
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -1.50
Structure conservation index 0.60
SVM decision value 0.28
SVM RNA-class probability 0.664870
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12674262 92 + 22407834
GGCUGCCCG-AAAAGGUUGCUUGCGGCAUUCUAAAAAGAAAAAAAAAACCCAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACA------A
...(((((.-.(((((((((((...(((((((....))))....................)))...))))------)))))))....))).)).....------. ( -20.95)
>DroPse_CAF1 65903 86 + 1
-----CACGAAAAAGGUUGCUUGCAGCGCACAA-------CA-CAAAACCGAACCACAAUUGCAUGAGGUAACGGUAACCUUUGACAGGGACACAACU------G
-----......(((((((((.....))......-------..-....((((.(((.((......)).)))..)))))))))))..(((........))------) ( -16.60)
>DroEre_CAF1 56619 82 + 1
GGCUGCCCG-AAAAGGUUGCUUGCGGCGUUCUAAA----------AAACCGAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACA------A
...(((((.-.(((((((((((((((.((((....----------.....)))).....)))))...)))------)))))))....))).)).....------. ( -21.80)
>DroYak_CAF1 57360 84 + 1
GGCUGCCUG-AAAAGGUUGCUUGCGGCAUUCUAAA--------AAAAACCGAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACA------A
(..(.((((-.(((((((((((...(((.......--------.................)))...))))------)))))))..)))).)..)....------. ( -21.66)
>DroAna_CAF1 47477 88 + 1
GGUUGUCUU-GAAAGGUUGCUUGUGGCGGAC---------AA-AAAAACCGAACCACAAUUGCAUGAGGU------AACCUUUGACAGGGACACAACACAAAAAA
.((((((((-(((((((((((((((((((..---------..-.....)))..))))).........)))------)))))))..))))...)))))........ ( -24.30)
>DroPer_CAF1 65565 86 + 1
-----CACGAAAAAGGUUGCUUGCGGCGCACAA-------CA-CAAAACCGAACCACAAUUGCAUGAGGUAACGGUAACCUUUGACAGGGCCACAACU------G
-----......((((((((((..(((.......-------..-.....))).(((.((......)).)))...))))))))))..(((........))------) ( -17.04)
>consensus
GGCUGCCCG_AAAAGGUUGCUUGCGGCGUACUA________A_AAAAACCGAACCACAAUUGCAUGAGGU______AACCUUUGACAGGGACACAACA______A
.....(((...(((((((((.....)).........................(((.((......)).)))......)))))))....)))............... (-12.29 = -12.27 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:02 2006