| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,665,382 – 12,665,478 |
| Length | 96 |
| Max. P | 0.721004 |
| Location | 12,665,382 – 12,665,478 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.52 |
| Mean single sequence MFE | -31.68 |
| Consensus MFE | -19.89 |
| Energy contribution | -20.58 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12665382 96 + 22407834 ----------GAUGAGGCAUUAUUGGAUAAGCAGCGGAAGCAGGU-----UGCCGUGCCGCAAGAGGCAUUCUGCAUGUAAUUAUGGAAACAUGGUUUUGGCCAGUUGUUU ----------(((((....)))))....(((((((((..((((..-----((((....(....).))))..))))....(((((((....)))))))....)).))))))) ( -30.10) >DroPse_CAF1 56381 96 + 1 ------------CGAGAC--U-GGGGCUAAGCGGCGGAAGCAGGUCGGGUCGCCGUGGCCUAAAAGGCAUUCUGCAUGUAAUUAUGGAAACAUGCUUUUGGCAACUUGUUU ------------((((.(--(-.(((((..(((((((..(.....)...))))))))))))...))((.....((((((..........)))))).....))..))))... ( -30.40) >DroEre_CAF1 46394 95 + 1 ----------GAUGAGGCAUUGUUGGCUAAGCGGCGGAAGCAGGC-----UGC-GUGGCGUAGGGGGCAUUCUGCAUGUAAUUAUGGAAACAUGGUUUUGGCCAGUUGCUC ----------.....((((...(((((((((((((((((((...(-----(((-(...)))))...)).)))))).)))(((((((....))))))))))))))).)))). ( -36.00) >DroYak_CAF1 48210 96 + 1 ----------GAUGAGGCAUUAUUGGCUAAGCGGCGGAAGCAAAC-----UGCCGUGCCAUGAAAGGCAUUCUGCAUGUAAUUAUGGAAACAUGGUUUUGGCAAGUUGUUU ----------...(((((.....((((...(((((((.......)-----))))))))))......)).)))(((....(((((((....)))))))...)))........ ( -30.40) >DroAna_CAF1 39333 106 + 1 UGGGUCUGGCGAUGAGGCAUUAUUGGCCAAGCGGCGGAAGCAGGU-----UGCCGUGGCAUAAAAGGCAUUCUGCAUGUAAUUAUGGAAACAUGGUUUUGGCAAGUUGUUU ...((((((((((..(((.......))).....((....))..))-----))))).))).....(((((...(((....(((((((....)))))))...)))...))))) ( -34.50) >DroPer_CAF1 55899 96 + 1 ------------CGAGAC--U-GGGGCUAAGCGACGGAAGCAGGUCGGGUCGCCGUGGCCUAAAAGGCAUUCUGCAUGUAAUUAUGGAAACAUGCUUUUGGCAACUUGUUU ------------((((.(--(-.((((((.(((((.((......))..)))))..))))))...))((.....((((((..........)))))).....))..))))... ( -28.70) >consensus __________GAUGAGGCAUUAUUGGCUAAGCGGCGGAAGCAGGU_____UGCCGUGGCAUAAAAGGCAUUCUGCAUGUAAUUAUGGAAACAUGGUUUUGGCAAGUUGUUU ..............(((((......((((((((((....))..........(((...........)))....)))....(((((((....))))))))))))....))))) (-19.89 = -20.58 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:59 2006