Locus 440

Sequence ID 2L_DroMel_CAF1
Location 1,307,054 – 1,307,158
Length 104
Max. P 0.640016
window715

overview

Window 5

Location 1,307,054 – 1,307,158
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.14
Mean single sequence MFE -26.30
Consensus MFE -17.90
Energy contribution -17.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -3.40
Structure conservation index 0.68
SVM decision value 0.22
SVM RNA-class probability 0.640016
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1307054 104 - 22407834
AGGCGGGAAGGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUA-------------CG
..(((((((((((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))))))).-------------.. ( -29.20)
>DroVir_CAF1 104852 102 - 1
CGUUGGGAAAGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGGCC---------------
.((((((((.(((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))))))).--------------- ( -25.90)
>DroGri_CAF1 94348 103 - 1
AGUCGGUAAAGCGC--AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGGCC---------------
.(((((....(((.--.......)))(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))))))).--------------- ( -26.10)
>DroWil_CAF1 94920 117 - 1
AGCCGGGAAAGCG---AAAAAUUCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCUUAGCACCCAGGACUUGCU
..(((((...(((---(.....))))(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))........))).))....... ( -28.10)
>DroMoj_CAF1 131780 98 - 1
UCU----GAAGCG---AAAAGCCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGACC---------------
...----...((.---....)).((.(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))).))...--------------- ( -20.30)
>DroPer_CAF1 99221 107 - 1
AAGCGGGAAAGCGCACAAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUA-------------CG
..(((((((((((..........)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))))))).-------------.. ( -28.20)
>consensus
AGUCGGGAAAGCG___AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGGCC_______________
..........(((..........)))(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))..................... (-17.90 = -17.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:17 2006