Locus 4397

Sequence ID 2L_DroMel_CAF1
Location 12,653,249 – 12,653,342
Length 93
Max. P 0.831860
window6930

overview

Window 0

Location 12,653,249 – 12,653,342
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 91.15
Mean single sequence MFE -23.69
Consensus MFE -19.53
Energy contribution -20.37
Covariance contribution 0.83
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.82
SVM decision value 0.72
SVM RNA-class probability 0.831860
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12653249 93 + 22407834
AGUUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCAUG--CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU
....((((........((((((....)))))).(((((((((((((((--....)))).((....))..)))))))))))..........)))). ( -24.30)
>DroPse_CAF1 41813 94 + 1
AGUUUUGCAACAUUUUCUGC-CAUUUGUGCAGUUUUUCAUGUUCCAUGGCUUCUCGUGUGCCAUGGCUGGGAUAUGAAAAUUUUCCAAGCGCACU
.....(((........((((-(....).)))).(((((((((((((((((.........)))))))....))))))))))..........))).. ( -26.20)
>DroEre_CAF1 34437 93 + 1
AGUUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCAUG--CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU
....((((........((((((....)))))).(((((((((((((((--....)))).((....))..)))))))))))..........)))). ( -24.30)
>DroYak_CAF1 35691 93 + 1
AGCUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCCUG--CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU
....((((.........(((((((..(.((((.............)))--).)..)))))))...((..(((.((....))..)))..)))))). ( -23.62)
>DroAna_CAF1 27772 92 + 1
AGU-UUGCAACAUUUUCUGCACAUUUUUGCAGUUUUUCAUGCUCCAAG--CUCUCAUGUGCACUGGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU
.((-(((.........(((((......))))).((((((((.(((..(--((............)))..))))))))))).....)))))..... ( -19.80)
>DroPer_CAF1 41532 94 + 1
AGUUUUGCAACAUUUUCUGC-CAUUUGUGCAGUUUUUCAUGUUCCAUGGCUUCUCGUGUGCCCUGGCUGGGAUAUGAAAAUUUUCCAAGCGCACU
.....(((........((((-(....).)))).(((((((((((((.(((.........))).....)))))))))))))..........))).. ( -23.90)
>consensus
AGUUUUGCAACAUUUUCUGCACAUUUGUGCAGUUUUUCAUGUUCCAUG__CUCUCAUGUGCACCAGCCAGGAUAUGAAAAUUUUCCAAGCGCAAU
.....(((........((((((....)))))).(((((((((((((((......)))).((....))..)))))))))))..........))).. (-19.53 = -20.37 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:54 2006