Locus 4393

Sequence ID 2L_DroMel_CAF1
Location 12,640,110 – 12,640,214
Length 104
Max. P 0.957078
window6923

overview

Window 3

Location 12,640,110 – 12,640,214
Length 104
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 95.04
Mean single sequence MFE -23.22
Consensus MFE -18.96
Energy contribution -19.96
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.13
Structure conservation index 0.82
SVM decision value 1.47
SVM RNA-class probability 0.957078
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12640110 104 - 22407834
UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUUGCAGAUA-------ACU
...(((((((.....)))))))..(((((.(((((.((....))))))).((........((((....))))(((((((((....))))))))))).))))-------).. ( -23.70)
>DroSec_CAF1 21182 111 - 1
UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACCUGAAAAUUAAUUAAUAUUGAUUGUGCAGAUAAUGGUUUACU
...(((((((.....)))))))....(((((....((((((((((....)))........((.(....).))..................)))))))....)))))..... ( -21.20)
>DroSim_CAF1 21915 111 - 1
UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUGUGCAGAUAAUGGUUUACU
...(((((((.....)))))))....(((((....((((((((((....)))........((((....))))..................)))))))....)))))..... ( -25.50)
>DroEre_CAF1 21280 110 - 1
UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUU-GAGAUAAUGGUUUACU
...(((((((.....))))))).((((((.......(((...(((....)))..)))...((((....))))(((((((((....)))))))))-..))))))........ ( -22.90)
>DroYak_CAF1 21814 110 - 1
UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGUCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUU-CAGAUAAUGAUUUACU
...(((((((.....))))))).((((((...(((((....(((........))).....))))).....(((((((((((....)))))))))-))))))))........ ( -22.80)
>consensus
UAAAUUGCAUUUAAAAUGCAAUAAUUAUCAUAUUAUGCGCAGGCUGAUAAGCGACGUCAACAUGGGAACAUGAAAAUUAAUUAAUAUUGAUUUUGCAGAUAAUGGUUUACU
...(((((((.....))))))).((((((.....((((((..........))).)))...((((....))))(((((((((....)))))))))...))))))........ (-18.96 = -19.96 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:48 2006