Locus 4389

Sequence ID 2L_DroMel_CAF1
Location 12,633,413 – 12,633,509
Length 96
Max. P 0.659487
window6916

overview

Window 6

Location 12,633,413 – 12,633,509
Length 96
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.74
Mean single sequence MFE -28.92
Consensus MFE -16.99
Energy contribution -17.30
Covariance contribution 0.31
Combinations/Pair 1.21
Mean z-score -1.69
Structure conservation index 0.59
SVM decision value 0.26
SVM RNA-class probability 0.659487
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12633413 96 + 22407834
GGAAGGGCAUCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUACGUAU--UUCUCCUGGCUAUAUGGUAUCUACUAUCGGUAUCCCUAUCCCUUCGCUU
.((((((.....---..((((((((.((.....-)))))))(((..(((((--.((....))..)))))..)))........))).......)))))).... ( -25.74)
>DroSec_CAF1 14444 92 + 1
GGGAGGGAACCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUGCGUAU--UUCUCCUGGCUAUGUGGU----ACUAUCAGUAUCCCUAUCCCUUCGCUU
(((((..(..((---(...((((((.((.....-))))))))...)))..)--..)))))((.((.(.(((----((.....)))))).)).))........ ( -33.40)
>DroSim_CAF1 14870 92 + 1
GGGAGGGCAUCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUACGUGU--UUCUCCUGGCUAUAUGGU----ACUAUCGGUAUCCCUAUCCCUUCGCUU
(((((((((.((---....((((((.((.....-))))))))....)))).--)))))))((......(((----((.....)))))......))....... ( -27.40)
>DroEre_CAF1 14509 92 + 1
GGGAGGGAACCG---CGUGCGAGGGUGUUUCUC-GCCCCUCGAUUACACAU--UUCUCCUGGAUACAUGGU----ACCAUCGGUAUCCCCAUACCUAUCCCU
(((((((((..(---.(((((((((.((.....-))))))))..))).)..--)))))..(((((((((..----..)))..)))))).........)))). ( -30.60)
>DroYak_CAF1 14695 92 + 1
GGGAGGGAACCG---CUUGCGAGGGUGUUUCUG-GCCCCUCGAUUACGUAU--UUCUCCCGGUGUUAUGGU----ACUAUAGGUAUCCCUAUUCCUUCGCUU
(((((..(..((---....((((((.((.....-))))))))....))..)--..)))))((((....((.----...(((((....))))).))..)))). ( -34.70)
>DroAna_CAF1 9330 83 + 1
----GGGCUACUCAAAAUGCGAGGGUGUUUUUGGGCCCCUCGAUUACAUAUCUUUCUUCUGGUUAU---------ACCACUGGUAUC------CCUUCGCUU
----(((.(((.((.....((((((.(((....))))))))).................(((....---------.))).))))).)------))....... ( -21.70)
>consensus
GGGAGGGAACCG___CUUGCGAGGGUGUUUCUG_GCCCCUCGAUUACGUAU__UUCUCCUGGCUAUAUGGU____ACUAUCGGUAUCCCUAUCCCUUCGCUU
(((((((............((((((.((......))))))))...........)))))))((....((((.....(((...)))....)))).))....... (-16.99 = -17.30 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:41 2006