Locus 4382

Sequence ID 2L_DroMel_CAF1
Location 12,621,872 – 12,621,968
Length 96
Max. P 0.766806
window6899

overview

Window 9

Location 12,621,872 – 12,621,968
Length 96
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 88.58
Mean single sequence MFE -28.64
Consensus MFE -20.90
Energy contribution -22.90
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.73
SVM decision value 0.52
SVM RNA-class probability 0.766806
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12621872 96 - 22407834
G------CCGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGGGA
(------((((.(((((..((((((((((((.........)))))(((((....))))))))))))...((.((....)))).....))))))))))..... ( -33.20)
>DroSec_CAF1 2862 99 - 1
GC---AGCAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGAAA
((---....)).(((....((((((((((((.........)))))(((((....))))))))))))...(((.(((...............))).)))))). ( -30.36)
>DroSim_CAF1 2893 99 - 1
GC---AGCAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGAAA
((---....)).(((....((((((((((((.........)))))(((((....))))))))))))...(((.(((...............))).)))))). ( -30.36)
>DroEre_CAF1 2780 95 - 1
G------CAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCACAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAA-UGAGGCGGCCGUCA
.------............((((((((((((.........)))))(((.(....).))))))))))...(((((((.((..((....-)).)).))))))). ( -30.30)
>DroYak_CAF1 2923 90 - 1
GCAGCAGCAGCAUUGGAAACGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUGGCGAAAACCACAGGCGGCCACCCCCAAAAC-UGA-----------
...((....)).((((((.....)))))).......(((((((((((...(....(((......)))....).)))).....)))))-)).----------- ( -19.00)
>consensus
GC___AGCAGCAUUCGAAAGGUUUUCCAGAAUUUUACAGUUUUUGGCAGAGAAAUUUGCGAAAACCACAGGCGGCCACCCCCAAAAAUUGAGGCGGCCGAAA
...................((((((((((((.........)))))(((((....)))))))))))).....(((((.((.(........).)).)))))... (-20.90 = -22.90 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:26 2006