| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 12,612,577 – 12,612,667 |
| Length | 90 |
| Max. P | 0.948706 |
| Location | 12,612,577 – 12,612,667 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 84.92 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -16.42 |
| Energy contribution | -17.87 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 12612577 90 + 22407834 CCCAUUUAUAAAGAUUGCAAAAGCUAAGAUUAAAAACGUUUUAGAUGAUUUUGCAGACUGUACUGGUAUUCCAAGUAUAU------------AAAUGAUUAA ..((((((((.((.((((((((.(((((((.......)))))))....)))))))).)).((((((....)).)))))))------------)))))..... ( -21.90) >DroSec_CAF1 179283 101 + 1 CCCAUUUAUAAAGAUUGCAAAAUCUAUGAUUAAAA-GAUUUUAGAUGAUUUUGCACACUGUACUGGUAUACCAAGUAUAGCAUUUAACAGUCUAAUGAUUAA ...........(((((((((((((..(((......-....)))...))))))))...(((((((((....)).)))))))........)))))......... ( -20.90) >DroSim_CAF1 184598 101 + 1 CCCAUUUAUAAAGAUUGCAAAAUCUAACAUUAAAA-GAUUUUAGAUGAUUUUGCACACUGUACUGGUAUACCAAGUAUAGCAUUUCACACUCUAAUGAUUAA ..((((.........((((((((((((.(((....-))).))))))...))))))..(((((((((....)).))))))).............))))..... ( -18.40) >consensus CCCAUUUAUAAAGAUUGCAAAAUCUAAGAUUAAAA_GAUUUUAGAUGAUUUUGCACACUGUACUGGUAUACCAAGUAUAGCAUUU_ACA_UCUAAUGAUUAA ..((((.........((((((((((((((((.....)))))))))...)))))))..(((((((((....)).))))))).............))))..... (-16.42 = -17.87 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006