Locus 4372

Sequence ID 2L_DroMel_CAF1
Location 12,595,050 – 12,595,140
Length 90
Max. P 0.643291
window6886

overview

Window 6

Location 12,595,050 – 12,595,140
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 83.71
Mean single sequence MFE -18.58
Consensus MFE -13.05
Energy contribution -14.38
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.70
SVM decision value 0.23
SVM RNA-class probability 0.643291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12595050 90 + 22407834
UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAAAAAUGAAAUGAUUAUGCUUUAUGCUAUGUGCCAUG
...(((((.((((((.(((....)))....))))))((..((((((((((......))))))))))....))...........))))).. ( -20.90)
>DroPse_CAF1 213795 69 + 1
AUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAUC--------------------UCCAUG
....(((..((((...(((....)))....))))..))).....((((((.....-))))))..--------------------...... ( -12.20)
>DroSec_CAF1 162073 89 + 1
UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCUGCCUUUAUUUCAUUCAUAA-AAUGAAAUGAUUAUGCUGUAUGCUAUGUGCCAUG
...(((((.((((.(((((....))).....((((.((..((((((((((.....-))))))))))....)).))))))))))))))).. ( -21.30)
>DroSim_CAF1 165435 89 + 1
UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAAUGAUUAUGCUAUAUGCUAUGUGCCAUG
...(((((.((((((.(((....)))....))))))((..((((((((((.....-))))))))))....))...........))))).. ( -20.70)
>DroYak_CAF1 165502 89 + 1
UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAAUGAUUAUGCUAUAUGCUAUAUGGCAUG
....(((..((((...(((....)))....))))..))).((((((((((.....-)))))))))).((((((((((...)))))))))) ( -24.20)
>DroPer_CAF1 210952 69 + 1
AUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA-AAUGAAUC--------------------UCCAUG
....(((..((((...(((....)))....))))..))).....((((((.....-))))))..--------------------...... ( -12.20)
>consensus
UUUUGGCAACGUGUGUGUCUUUUGAUUUAUUAUGCGGCCUUUAUUUCAUUCAUAA_AAUGAAAUGAUUAUGCU_UAUGCUAUGUGCCAUG
....(((..((((...(((....)))....))))..))).((((((((((......))))))))))........................ (-13.05 = -14.38 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:13 2006