| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,304,947 – 1,305,038 |
| Length | 91 |
| Max. P | 0.985982 |
| Location | 1,304,947 – 1,305,038 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 94.27 |
| Mean single sequence MFE | -23.92 |
| Consensus MFE | -22.99 |
| Energy contribution | -22.85 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.985982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1304947 91 - 22407834 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGCGAGUGCGA -...((((.((((((.((.....((((.((.(((((....)))))...)).))))((((((.....))))))...)).)))).)).)))).. ( -26.30) >DroSec_CAF1 63744 82 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAACAUG--------- -(((((.((((............((((.((.(((((....)))))...)).))))((....))...)))))))))........--------- ( -23.20) >DroSim_CAF1 64593 85 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC------GA -...(((((((............((((.((.(((((....)))))...)).))))((((((.....))))))....)).)))))------.. ( -23.80) >DroEre_CAF1 75223 85 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC------GA -...(((((((............((((.((.(((((....)))))...)).))))((((((.....))))))....)).)))))------.. ( -23.80) >DroYak_CAF1 66104 86 - 1 UGUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC------GA ....(((((((............((((.((.(((((....)))))...)).))))((((((.....))))))....)).)))))------.. ( -23.80) >DroAna_CAF1 89864 85 - 1 -GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGUCGUGGCAAACAUGGCCACAUAUUGUGC------GA -...(((((.(((..........((((.((.(((((....)))))...)).)))))))(((((.......)))))....)))))------.. ( -22.60) >consensus _GUGGCAUAUGACAAAGUUUAAGUGCUUGCUAAAUCCAUAGAUUUCAUGCUGGCAGCCGUGGCAAACAUGGCCACACAUUGUGC______GA .(((((.((((............((((.((.(((((....)))))...)).))))((....))...)))))))))................. (-22.99 = -22.85 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:14 2006