Locus 4369

Sequence ID 2L_DroMel_CAF1
Location 12,579,200 – 12,579,296
Length 96
Max. P 0.825701
window6882

overview

Window 2

Location 12,579,200 – 12,579,296
Length 96
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 86.25
Mean single sequence MFE -32.82
Consensus MFE -25.18
Energy contribution -25.85
Covariance contribution 0.67
Combinations/Pair 1.19
Mean z-score -3.04
Structure conservation index 0.77
SVM decision value 0.70
SVM RNA-class probability 0.825701
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 12579200 96 + 22407834
GUGGAAAUACCAUAAAAGUAGUGC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGAAAUGGAUCUAAAAAAAAA
.((((....((((..((.((((.(---....(((((....)))))...).))--)).)).(((((((((....)))))))))..)))).))))........ ( -26.80)
>DroSec_CAF1 144399 92 + 1
GUGGAAAUCCCAUAAAAGUAGUGC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGGAACGGAUCUAAA----AA
.((((..(((........((((.(---....(((((....)))))...).))--))(((((((((((((....))))))))))))))))))))..----.. ( -35.20)
>DroSim_CAF1 147626 92 + 1
GUGGAAAUCCCAUAAAAGUAGUGC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGGAACGGAUCUAAA----AA
.((((..(((........((((.(---....(((((....)))))...).))--))(((((((((((((....))))))))))))))))))))..----.. ( -35.20)
>DroEre_CAF1 143357 92 + 1
GUGGAAAUCGCACAAAAGUAGUCC---AGCAGCGCCAUCUGGCGUCCGGAAC--UGGUUCCAACUCCUUAUCGAAGGGGUUGGAAUGGUUCUAAA----AA
.((((...(........)...)))---)...(((((....)))))..(((((--((.((((((((((((....)))))))))))))))))))...----.. ( -35.90)
>DroYak_CAF1 149000 92 + 1
AUGGAAAUCCCACAAAAGUAGCUC---AGCAGCGCCAUCUGGCGUGCGGAAC--UGGUUCCCACUCCUUAUCGAAGGGGUUGGAAUGGUUCUAAA----AA
.(((.....)))............---.(((.((((....)))))))(((((--((.((((.(((((((....))))))).)))))))))))...----.. ( -32.80)
>DroPer_CAF1 190257 95 + 1
GUGGAAAUCCUAGAAA--CAGUCCUCCACCAGCGCCAUCUGGCGUAAGGAAUGGUGGGUUUACCUCCUCAUAGAAGGGGUUGGAAGUGUUCUAAA----AA
..((....))(((((.--...(((((((((((((((....)))))......)))))))...(((.(((......)))))).)))....)))))..----.. ( -31.00)
>consensus
GUGGAAAUCCCAUAAAAGUAGUGC___AGCAGCGCCAUCUGGCGUCCGGAAC__UGGUUCCAACUCCUUAUCGAAGGGGUUGGAAUGGAUCUAAA____AA
.((((....((.........((......)).(((((....)))))..)).......(((((((((((((....)))))))))))))...))))........ (-25.18 = -25.85 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:09 2006